AMTR_s00077p00186260 (ATRECQ4A, ATSGS1,...)

Aliases : ATRECQ4A, ATSGS1, RECQ4A, evm_27.TU.AmTr_v1.0_scaffold00077.217

Description : ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana

Gene families : OG0007173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007173_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00077p00186260
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Ceric.18G010900.1	MED34, ATRECQ2,...	not classified & original description: pacid=50621519...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.28	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre12.g490150	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
LOC_Os07g48360.1	MED34, ATRECQ2,...	Mediator of RNA polymerase II transcription subunit 34...	0.07	OrthoFinder output from all 47 species
Len_g20646	MED34, ATRECQ2, RECQL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10427638g0020	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_10429752g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Msp_g36149	ATRECQ4A, ATSGS1, RECQ4A	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g25086	MED34, ATRECQ2, RECQL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16336	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e035873_P003	MED34, ATRECQ2,...	ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007090	obsolete regulation of S phase of mitotic cell cycle	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008378	galactosyltransferase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0016597	amino acid binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	216	292
IPR002121	HRDC_dom	520	584
IPR011545	DEAD/DEAH_box_helicase_dom	2	144
IPR018982	RQC_domain	374	467

External Links

No external refs found!

AMTR_s00077p00186260 (ATRECQ4A, ATSGS1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation