AMTR_s00077p00042770 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.25

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS26 component

Gene families : OG0001368 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001368_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00077p00042770
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AT2G40510	No alias	Ribosomal protein S26e family protein	0.11	OrthoFinder output from all 47 species
AT2G40590	No alias	Ribosomal protein S26e family protein	0.06	OrthoFinder output from all 47 species
AT3G56340	No alias	Ribosomal protein S26e family protein	0.07	OrthoFinder output from all 47 species
Adi_g026438	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g040240	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aev_g07493	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g26360	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g38942	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g55697	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g17895	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g22616	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g30554	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g31638	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g67998	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene44797.t1	Aspi01Gene44797	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0008.g011486	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0038.g026316	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g20558	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.21G032100.1	Ceric.21G032100	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001486.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Cre16.g682300	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Dac_g16013	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g27155	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g33608	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g00870	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g02248	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Ehy_g01928	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01024576001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01032696001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Gb_00995	No alias	component RPS26 of SSU proteome	0.11	OrthoFinder output from all 47 species
Gb_00996	No alias	component RPS26 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g60790.1	LOC_Os01g60790	component RPS26 of SSU proteome	0.1	OrthoFinder output from all 47 species
LOC_Os05g39960.1	LOC_Os05g39960	component RPS26 of SSU proteome	0.17	OrthoFinder output from all 47 species
Len_g00840	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g02472	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g15449	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g40318	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_114136g0010	No alias	component RPS26 of SSU proteome	0.05	OrthoFinder output from all 47 species
MA_74546g0010	No alias	component RPS26 of SSU proteome	0.08	OrthoFinder output from all 47 species
Mp2g06210.1	No alias	component RPS26 of SSU proteome	0.11	OrthoFinder output from all 47 species
Nbi_g20040	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ore_g04059	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g09911	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c16_9210V3.1	Pp3c16_9210	Ribosomal protein S26e family protein	0.06	OrthoFinder output from all 47 species
Pp3c5_16070V3.1	Pp3c5_16070	Ribosomal protein S26e family protein	0.09	OrthoFinder output from all 47 species
Pp3c6_8910V3.1	Pp3c6_8910	Ribosomal protein S26e family protein	0.07	OrthoFinder output from all 47 species
Ppi_g00321	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g15469	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Ppi_g19798	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g34120	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g42559	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014966	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g05476	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g15700	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g20299	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g47002	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Smo77589	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Solyc04g008810.3.1	Solyc04g008810	component RPS26 of SSU proteome	0.15	OrthoFinder output from all 47 species
Solyc06g007470.3.1	Solyc06g007470	component RPS26 of SSU proteome	0.05	OrthoFinder output from all 47 species
Spa_g03106	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g09954	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g26404	No alias	component *(eS26) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Zm00001e011780_P001	Zm00001e011780	component RPS26 of SSU proteome	0.13	OrthoFinder output from all 47 species
Zm00001e027298_P001	Zm00001e027298	component RPS26 of SSU proteome	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005787	signal peptidase complex	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000892	Ribosomal_S26e	1	111

External Links

No external refs found!

AMTR_s00077p00042770 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation