1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00069p00185250

AMTR_s00069p00185250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.184

Description : BEACH domain-containing protein C2 OS=Arabidopsis thaliana


Gene families : OG0005532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005532_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00185250

Target Alias Description ECC score Gene Family Method Actions
AT2G45540 No alias WD-40 repeat family protein / beige-related 0.05 OrthoFinder output from all 47 species
Adi_g107386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29586.t1 Aspi01Gene29586 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z002100.1 Ceric.1Z002100 not classified & original description: pacid=50637203... 0.04 OrthoFinder output from all 47 species
Dcu_g11295 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g50882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027547001 No alias BEACH domain-containing protein C2 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_14861 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g46892.1 LOC_Os04g46892 BEACH domain-containing protein C2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g46894.1 LOC_Os04g46894 BEACH domain-containing protein C2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g03525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_16421g0010 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp6g16270.1 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Msp_g13656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08434 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g16690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012635 No alias EC_1.4 oxidoreductase acting on CH-NH2 group of donor &... 0.03 OrthoFinder output from all 47 species
Solyc01g094050.1.1 Solyc01g094050 BEACH domain-containing protein C2 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Solyc01g094060.4.1 Solyc01g094060 BEACH domain-containing protein C2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e007294_P001 Zm00001e007294 BEACH domain-containing protein C2 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Zm00001e015356_P001 Zm00001e015356 BEACH domain-containing protein C2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004047 aminomethyltransferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000409 BEACH_dom 608 885
IPR001680 WD40_repeat 1041 1071
IPR001680 WD40_repeat 1118 1149
IPR010508 NBEA-like_DUF1088 315 354
No external refs found!