AMTR_s00068p00103300 (emb2734,...)

Aliases : emb2734, evm_27.TU.AmTr_v1.0_scaffold00068.52

Description : Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB3 import karyopherin

Gene families : OG0001766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001766_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00068p00103300

Target	Alias	Description	ECC score	Gene Family Method
Ceric.17G003600.1	emb2734, Ceric.17G003600	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001030.13	emb2734	Protein translocation.nucleus.nucleocytoplasmic...	0.01	OrthoFinder output from all 47 species
Dcu_g12588	emb2734	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g16157	emb2734	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.03	OrthoFinder output from all 47 species
Gb_38404	emb2734	IMB3 nucleocytoplasmic import karyopherin	0.03	OrthoFinder output from all 47 species
Lfl_g06735	emb2734	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g10978	emb2734	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.03	OrthoFinder output from all 47 species
MA_10432206g0010	emb2734	IMB3 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species
MA_10437257g0020	emb2734	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Ore_g34554	emb2734	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.07	OrthoFinder output from all 47 species
Pir_g15704	emb2734	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.02	OrthoFinder output from all 47 species
Sam_g16162	No alias	nucleocytoplasmic import karyopherin *(IMB3) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008565	obsolete protein transporter activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000357	HEAT	925	953
IPR001494	Importin-beta_N	42	113

External Links

No external refs found!