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  5. AMTR_s00067p00050020

AMTR_s00067p00050020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.30

Description : Cell wall.pectin.rhamnogalacturonan II.synthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) synthesis.D-arabinose-5-phosphate isomerase


Gene families : OG0006389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006389_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00067p00050020

Target Alias Description ECC score Gene Family Method Actions
Adi_g023295 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05268 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12708 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G032000.1 Ceric.31G032000 D-arabinose-5-phosphate isomerase & original... 0.02 OrthoFinder output from all 47 species
Gb_31024 No alias D-arabinose-5-phosphate isomerase 0.03 OrthoFinder output from all 47 species
Msp_g03475 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c2_23370V3.1 Pp3c2_23370 Sugar isomerase (SIS) family protein 0.01 OrthoFinder output from all 47 species
Pp3c5_14840V3.1 Pp3c5_14840 Sugar isomerase (SIS) family protein 0.01 OrthoFinder output from all 47 species
Sam_g19861 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
InterPro domains Description Start Stop
IPR000644 CBS_dom 281 336
IPR000644 CBS_dom 213 269
IPR001347 SIS_dom 55 183
No external refs found!