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  5. AMTR_s00066p00198600

AMTR_s00066p00198600 (PTAC4, VIPP1,...)


Aliases : PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264

Description : Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein


Gene families : OG0002497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00066p00198600

Target Alias Description ECC score Gene Family Method Actions
AT1G65260 PTAC4, VIPP1 plastid transcriptionally active 4 0.06 OrthoFinder output from all 47 species
Adi_g016621 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Adi_g019901 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Aev_g12997 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.1 OrthoFinder output from all 47 species
Ala_g07068 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Als_g21262 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Aob_g05137 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.06 OrthoFinder output from all 47 species
Aob_g06622 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Aop_g01210 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Aop_g01641 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.08 OrthoFinder output from all 47 species
Aspi01Gene43440.t2 PTAC4, VIPP1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09434 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Ceric.21G054600.1 PTAC4, VIPP1,... protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Ceric.25G000800.1 PTAC4, VIPP1,... protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Cre13.g583550 PTAC4, VIPP1 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g07394 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Dcu_g03592 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Dcu_g15380 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Dde_g03283 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Dde_g07895 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Ehy_g05570 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Ehy_g07429 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01019065001 PTAC4, VIPP1 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
GSVIVT01038103001 PTAC4, VIPP1 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Gb_32562 PTAC4, VIPP1 VIPP protein involved in plastid membrane fusion 0.05 OrthoFinder output from all 47 species
Gb_40732 PTAC4, VIPP1 VIPP protein involved in plastid membrane fusion 0.02 OrthoFinder output from all 47 species
LOC_Os01g67000.1 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.08 OrthoFinder output from all 47 species
Mp5g20680.1 PTAC4, VIPP1 VIPP protein involved in plastid membrane fusion 0.02 OrthoFinder output from all 47 species
Msp_g08193 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Msp_g20762 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Nbi_g07063 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Ore_g16052 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Pir_g13472 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Ppi_g10062 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001918 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Sam_g07518 No alias protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Sam_g37496 No alias protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Smo93752 PTAC4, VIPP1 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
Solyc11g008990.2.1 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.08 OrthoFinder output from all 47 species
Spa_g11958 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Spa_g22241 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Tin_g13395 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Zm00001e018980_P001 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.09 OrthoFinder output from all 47 species
Zm00001e028569_P001 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007157 PspA_IM30 33 246
No external refs found!