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  5. AMTR_s00065p00140150

AMTR_s00065p00140150 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00065.96

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor


Gene families : OG0005021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00065p00140150
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g021891 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.05 OrthoFinder output from all 47 species
Adi_g107935 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.02 OrthoFinder output from all 47 species
Ala_g12818 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.03 OrthoFinder output from all 47 species
Als_g04465 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.04 OrthoFinder output from all 47 species
Aop_g22288 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.03 OrthoFinder output from all 47 species
Cba_g04054 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre13.g606850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dcu_g05765 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Len_g29124 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g31174 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.03 OrthoFinder output from all 47 species
Msp_g15669 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.02 OrthoFinder output from all 47 species
Ore_g36314 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.06 OrthoFinder output from all 47 species
Pir_g11358 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g06032 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001018 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.02 OrthoFinder output from all 47 species
Sam_g17714 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.03 OrthoFinder output from all 47 species
Solyc12g088290.2.1 Solyc12g088290 SSU processome assembly factor (UTP4/PCN) 0.04 OrthoFinder output from all 47 species
Spa_g48471 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.04 OrthoFinder output from all 47 species
Tin_g01242 No alias SSU processome assembly factor *(UTP4/PCN) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e012090_P001 Zm00001e012090 SSU processome assembly factor (UTP4/PCN) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 212 239
IPR001680 WD40_repeat 292 329
No external refs found!