Aliases : evm_27.TU.AmTr_v1.0_scaffold00065.45
Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00049p00200350 | evm_27.TU.AmTr_v1... | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
AT2G33410 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.06 | OrthoFinder output from all 47 species | |
AT5G40490 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g060246 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g074128 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g08530 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g09868 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g12260 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene69044.t1 | Aspi01Gene69044 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0003.g008091 | No alias | not classified & original description: CDS=1-1311 | 0.02 | OrthoFinder output from all 47 species | |
Cba_g02546 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g09256 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g09694 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g15471 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ceric.35G060600.1 | Ceric.35G060600 | not classified & original description: pacid=50581737... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001130.27 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020912.27 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Dac_g01601 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g01678 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dac_g15425 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g02177 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g16051 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g16527 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g16933 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01027891001 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
Gb_29426 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
Gb_32677 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g12850.1 | LOC_Os02g12850 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os10g33230.1 | LOC_Os10g33230 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Len_g02314 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g10917 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
MA_125759g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_141102g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species | |
MA_473g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_68291g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g22774 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g19973 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g31234 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Pir_g00523 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g05992 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g09717 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g17780 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g20108 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g08248 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g29827 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g10456 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g42376 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g121710.2.1 | Solyc03g121710 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g090520.3.1 | Solyc09g090520 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g11285 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g21333 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g21542 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e012709_P005 | Zm00001e012709 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e014461_P003 | Zm00001e014461 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e024336_P003 | Zm00001e024336 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e024934_P002 | Zm00001e024934 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e037155_P004 | Zm00001e037155 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |