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  5. AMTR_s00062p00184220

AMTR_s00062p00184220 (PRA1.B3,...)


Aliases : PRA1.B3, evm_27.TU.AmTr_v1.0_scaffold00062.181

Description : PRA1 family protein B4 OS=Arabidopsis thaliana


Gene families : OG0000542 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000542_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00062p00184220
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT1G17700 PRA1.F1 prenylated RAB acceptor 1.F1 0.03 OrthoFinder output from all 47 species
AT1G55640 PRA1.G1 prenylated RAB acceptor 1.G1 0.04 OrthoFinder output from all 47 species
Als_g13344 PRA1.B2 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G080600.1 PRA1.B5, Ceric.29G080600 B-G-class Rab-GDF protein & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g45879 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Gb_07381 PRA1.B2 B-G-class Rab-GDF protein 0.03 OrthoFinder output from all 47 species
Lfl_g12734 PRA1.B4 B-G-class Rab-GDF protein & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011117 PRA1.B4 B-G-class Rab-GDF protein & original description: CDS=1-600 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014691 PRA1.B2 B-G-class Rab-GDF protein & original description: CDS=1-618 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0186.g025049 PRA1.B3 B-G-class Rab-GDF protein & original description: CDS=1-630 0.04 OrthoFinder output from all 47 species
Sam_g11811 No alias B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031277_P001 PRA7, PRA1.F2,... B-G-class Rab-GDF protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR004895 Prenylated_rab_accept_PRA1 36 101
No external refs found!