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  5. AMTR_s00061p00202160

AMTR_s00061p00202160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.245

Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00202160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00111980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G66345 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01029769001 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.05 OrthoFinder output from all 47 species
GSVIVT01031237001 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.11 OrthoFinder output from all 47 species
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 OrthoFinder output from all 47 species
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.05 OrthoFinder output from all 47 species
Gb_08861 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.07 OrthoFinder output from all 47 species
Gb_12831 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.09 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.08 OrthoFinder output from all 47 species
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.05 OrthoFinder output from all 47 species
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_26765 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.05 OrthoFinder output from all 47 species
Gb_30066 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.03 OrthoFinder output from all 47 species
Gb_30544 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.03 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.05 OrthoFinder output from all 47 species
LOC_Os03g06910.1 LOC_Os03g06910 Pentatricopeptide repeat-containing protein At5g01110... 0.04 OrthoFinder output from all 47 species
LOC_Os04g38930.1 LOC_Os04g38930 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g19390.1 LOC_Os05g19390 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
MA_299481g0010 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.03 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.04 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.06 OrthoFinder output from all 47 species
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.05 OrthoFinder output from all 47 species
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.03 OrthoFinder output from all 47 species
Solyc01g100450.1.1 Solyc01g100450 Pentatricopeptide repeat-containing protein At1g09820... 0.05 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc05g051340.3.1 Solyc05g051340 group-II intron mitochondrial splicing factor (MISF26) 0.06 OrthoFinder output from all 47 species
Solyc07g047620.3.1 Solyc07g047620 Pentatricopeptide repeat-containing protein At4g26680,... 0.06 OrthoFinder output from all 47 species
Solyc11g073270.1.1 Solyc11g073270 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e007886_P001 Zm00001e007886 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e016768_P001 Zm00001e016768 group-II intron mitochondrial splicing factor (MISF26) 0.03 OrthoFinder output from all 47 species
Zm00001e016770_P001 Zm00001e016770 group-II intron mitochondrial splicing factor (MISF26) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 503 552
IPR002885 Pentatricopeptide_repeat 575 622
IPR002885 Pentatricopeptide_repeat 433 482
IPR002885 Pentatricopeptide_repeat 366 412
IPR002885 Pentatricopeptide_repeat 894 936
IPR002885 Pentatricopeptide_repeat 958 1005
IPR002885 Pentatricopeptide_repeat 153 201
IPR002885 Pentatricopeptide_repeat 293 342
IPR002885 Pentatricopeptide_repeat 224 272
IPR002885 Pentatricopeptide_repeat 678 726
IPR002885 Pentatricopeptide_repeat 86 115
IPR002885 Pentatricopeptide_repeat 821 847
IPR002885 Pentatricopeptide_repeat 850 881
IPR002885 Pentatricopeptide_repeat 639 672
No external refs found!