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  5. AMTR_s00061p00170900

AMTR_s00061p00170900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.179

Description : Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00170900
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Aev_g18261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05693.t1 Aspi01Gene05693 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05694.t1 Aspi01Gene05694 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g37191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.03 OrthoFinder output from all 47 species
MA_104591g0010 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.03 OrthoFinder output from all 47 species
MA_33956g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.03 OrthoFinder output from all 47 species
Ore_g25561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo94034 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 232
IPR002885 Pentatricopeptide_repeat 8 57
IPR002885 Pentatricopeptide_repeat 78 127
IPR002885 Pentatricopeptide_repeat 138 168
No external refs found!