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  5. AMTR_s00061p00165040

AMTR_s00061p00165040 (STA1, EMB2770,...)


Aliases : STA1, EMB2770, evm_27.TU.AmTr_v1.0_scaffold00061.166

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF6/PRP1/STA1 protein component


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00165040
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Ceric.1Z128700.1 STA1, EMB2770,... component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.19 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre14.g633650 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Gb_02940 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Lfl_g13254 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ore_g19399 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Sam_g26501 No alias component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Tin_g02882 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e018293_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR013105 TPR_2 790 821
IPR010491 PRP1_N 98 267
No external refs found!