AMTR_s00061p00026580 (MGO1, TOP1,...)


Aliases : MGO1, TOP1, TOP1ALPHA, evm_27.TU.AmTr_v1.0_scaffold00061.1

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase


Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00026580
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT5G55300 MGO1, TOP1, TOP1ALPHA DNA topoisomerase I alpha 0.06 OrthoFinder output from all 47 species
Aev_g03385 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14348 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51540.t1 MGO1, TOP1,... DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G042500.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g05782 MGO1, TOP1, TOP1ALPHA DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020301001 MGO1, TOP1, TOP1ALPHA Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.03 OrthoFinder output from all 47 species
Len_g17147 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25112 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35484 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41412 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11791 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03945 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008336 TopoI_DNA-bd_euk 361 573
No external refs found!