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  5. AMTR_s00060p00100190

AMTR_s00060p00100190 (EMB2656,...)


Aliases : EMB2656, evm_27.TU.AmTr_v1.0_scaffold00060.43

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I complex.CAP-G component


Gene families : OG0004871 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004871_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00100190
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT5G37630 EMB2656 ARM repeat superfamily protein 0.18 OrthoFinder output from all 47 species
Adi_g014220 EMB2656 component *(CAP-G) of condensin I complex & original... 0.02 OrthoFinder output from all 47 species
Ala_g23197 EMB2656 component *(CAP-G) of condensin I complex & original... 0.08 OrthoFinder output from all 47 species
Aop_g09315 EMB2656 component *(CAP-G) of condensin I complex & original... 0.09 OrthoFinder output from all 47 species
Aspi01Gene70823.t1 EMB2656, Aspi01Gene70823 component *(CAP-G) of condensin I complex & original... 0.13 OrthoFinder output from all 47 species
Azfi_s0120.g046764 EMB2656 component *(CAP-G) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Ceric.32G002700.1 EMB2656, Ceric.32G002700 component *(CAP-G) of condensin I complex & original... 0.19 OrthoFinder output from all 47 species
Cre08.g362500 No alias Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
GSVIVT01014028001 EMB2656 Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Gb_36529 EMB2656 component CAP-G of condensin I complex 0.13 OrthoFinder output from all 47 species
LOC_Os06g14460.1 EMB2656, LOC_Os06g14460 component CAP-G of condensin I complex 0.13 OrthoFinder output from all 47 species
Len_g02419 EMB2656 component *(CAP-G) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Lfl_g38796 EMB2656 component *(CAP-G) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
MA_1138812g0010 EMB2656 component CAP-G of condensin I complex 0.09 OrthoFinder output from all 47 species
MA_15527g0010 EMB2656 component CAP-G of condensin I complex 0.13 OrthoFinder output from all 47 species
Mp5g14270.1 EMB2656 component CAP-G of condensin I complex 0.15 OrthoFinder output from all 47 species
Msp_g31445 EMB2656 component *(CAP-G) of condensin I complex & original... 0.09 OrthoFinder output from all 47 species
Nbi_g05893 EMB2656 component *(CAP-G) of condensin I complex & original... 0.14 OrthoFinder output from all 47 species
Ppi_g15050 EMB2656 component *(CAP-G) of condensin I complex & original... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016204 EMB2656 component *(CAP-G) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Smo75276 EMB2656 Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder output from all 47 species
Solyc11g011370.2.1 EMB2656, Solyc11g011370 component CAP-G of condensin I complex 0.08 OrthoFinder output from all 47 species
Spa_g46563 EMB2656 component *(CAP-G) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
Tin_g11702 EMB2656 component *(CAP-G) of condensin I complex & original... 0.09 OrthoFinder output from all 47 species
Zm00001e036753_P002 EMB2656, Zm00001e036753 component CAP-G of condensin I complex 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0001882 nucleoside binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025977 Cnd3_C 515 873
IPR000357 HEAT 139 166
No external refs found!