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  5. AMTR_s00060p00031820

AMTR_s00060p00031820 (LHCA5,...)


Aliases : LHCA5, evm_27.TU.AmTr_v1.0_scaffold00060.7

Description : Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa5-type component


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00031820
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Aev_g05867 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10940 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16925 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14032 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 61 229
No external refs found!