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  5. AMTR_s00059p00142910

AMTR_s00059p00142910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.126

Description : Cytoskeleton.cytoskeleton-plasma membrane-cell wall interface.AT14a integrin-like protein


Gene families : OG0002926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00142910
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT5G66675 No alias Protein of unknown function (DUF677) 0.08 OrthoFinder output from all 47 species
Ala_g09092 No alias integrin-like protein *(AT14a) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48484.t1 Aspi01Gene48484 integrin-like protein *(AT14a) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11081 No alias integrin-like protein *(AT14a) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03774 No alias integrin-like protein *(AT14a) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01031916001 No alias UPF0496 protein At4g34320 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_12691 No alias integrin-like protein (AT14a) 0.02 OrthoFinder output from all 47 species
Gb_12692 No alias integrin-like protein (AT14a) 0.04 OrthoFinder output from all 47 species
LOC_Os03g10240.2 LOC_Os03g10240 integrin-like protein (AT14a) 0.04 OrthoFinder output from all 47 species
LOC_Os10g21540.1 LOC_Os10g21540 integrin-like protein (AT14a) 0.07 OrthoFinder output from all 47 species
MA_65035g0010 No alias integrin-like protein (AT14a) 0.03 OrthoFinder output from all 47 species
MA_783450g0010 No alias integrin-like protein (AT14a) 0.04 OrthoFinder output from all 47 species
Msp_g10983 No alias integrin-like protein *(AT14a) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09092 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g10738 No alias integrin-like protein *(AT14a) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g62514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g039740.3.1 Solyc11g039740 integrin-like protein (AT14a) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046417 chorismate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007749 DUF677 40 364
No external refs found!