1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00057p00191330

AMTR_s00057p00191330 (LEP,...)


Aliases : LEP, evm_27.TU.AmTr_v1.0_scaffold00057.212

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.ERF-type transcription factor


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00191330

Target Alias Description ECC score Gene Family Method Actions
Adi_g013362 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g031493 tny subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g111958 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g00499 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04425 DEAR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10151 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aop_g37207 DREB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03857.t1 Aspi01Gene03857 subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15146.t1 Aspi01Gene15146 subgroup ERF-V transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56610.t1 DREB26, Aspi01Gene56610 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56611.t1 DREB26, Aspi01Gene56611 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene58508.t1 Aspi01Gene58508 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G029900.1 Ceric.08G029900 not classified & original description: pacid=50638924... 0.03 OrthoFinder output from all 47 species
GSVIVT01002195001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 OrthoFinder output from all 47 species
GSVIVT01006277001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01014291001 ATERF4, RAP2.5,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01021146001 ERF-1, ATERF-1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01032961001 LEP RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
GSVIVT01032983001 Rap2.6L RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
Gb_07474 ERF-1, ATERF-1 transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Gb_07949 ERF-1, ATERF-1 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g43820.1 ERF5, ATERF-5,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os02g45420.1 LOC_Os02g45420 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
LOC_Os03g22170.1 HRE2, LOC_Os03g22170 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_10266433g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_179692g0020 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_19420g0010 No alias transcription factor (DREB) 0.05 OrthoFinder output from all 47 species
MA_27309g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_4929994g0010 ERF2, ATERF2, ATERF-2 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_912855g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.09 OrthoFinder output from all 47 species
MA_938274g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Ppi_g07532 CRF3 subgroup ERF-VI transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g021035 TINY2 subgroup ERF-III transcription factor & original... 0.05 OrthoFinder output from all 47 species
Smo409196 RAP2.11 External stimuli response.biotic... 0.01 OrthoFinder output from all 47 species
Solyc05g051200.1.1 ERF1, ATERF1,... transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Spa_g27989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026573_P001 Zm00001e026573 transcription factor (DREB) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 60 109
No external refs found!