AMTR_s00057p00141830 (HSS, ARF1-BP, ARF2,...)

Aliases : HSS, ARF1-BP, ARF2, ORE14, evm_27.TU.AmTr_v1.0_scaffold00057.126

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00057p00141830

Target	Alias	Description	ECC score	Gene Family Method
AT3G61830	ARF18	auxin response factor 18	0.02	OrthoFinder output from all 47 species
Adi_g081361	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g29334	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g11834	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g27076	ARF4	transcriptional repressor *(IAA/AUX) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g49574	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g33211	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g26256	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g59651	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46203.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene46204.t2	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.04	OrthoFinder output from all 47 species
Azfi_s0384.g067487	ARF8, ATARF8	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Cba_g07702	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020904.93	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g07132	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g23659	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10952	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g46643	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015035001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01025198001	ARF10	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
Gb_02925	ARF19, IAA22, ARF11	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Gb_32864	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Gb_33804	ARF16	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Lfl_g18657	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g29546	ARF11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g15857	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g04470	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10460	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g29226	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42998	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g04439	ARF10	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g12046	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo117217	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Spa_g12615	ARF16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g51847	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g29160	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013191_P001	ARF19, IAA22,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e013639_P001	ARF19, IAA22,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e039552_P004	HSS, ARF1-BP,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003311	AUX_IAA	605	703
IPR003340	B3_DNA-bd	148	248
IPR010525	ARF_dom	274	356

External Links

No external refs found!

AMTR_s00057p00141830 (HSS, ARF1-BP, ARF2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation