AMTR_s00057p00123940 (CLA, DXS, CLA1, DEF,...)

Aliases : CLA, DXS, CLA1, DEF, DXPS2, evm_27.TU.AmTr_v1.0_scaffold00057.102

Description : Secondary metabolism.terpenoids.methylerythritol phosphate pathway.DXS 1-deoxy-D-xylulose 5-phosphate synthase

Gene families : OG0001325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001325_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00057p00123940
Cluster	HCCA: Cluster_106

Target	Alias	Description	ECC score	Gene Family Method
Adi_g107983	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.02	OrthoFinder output from all 47 species
Aob_g06658	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.02	OrthoFinder output from all 47 species
Aspi01Gene16013.t1	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.03	OrthoFinder output from all 47 species
Aspi01Gene44218.t1	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.03	OrthoFinder output from all 47 species
GSVIVT01029169001	CLA, DXS, CLA1,...	Secondary metabolism.terpenoids.methylerythritol...	0.03	OrthoFinder output from all 47 species
Gb_40956	CLA, DXS, CLA1,...	1-deoxy-D-xylulose 5-phosphate synthase (DXS)	0.04	OrthoFinder output from all 47 species
LOC_Os05g33840.1	CLA, DXS, CLA1,...	1-deoxy-D-xylulose 5-phosphate synthase (DXS)	0.03	OrthoFinder output from all 47 species
Mp2g09130.1	CLA, DXS, CLA1,...	1-deoxy-D-xylulose 5-phosphate synthase (DXS)	0.03	OrthoFinder output from all 47 species
Nbi_g08983	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.02	OrthoFinder output from all 47 species
Ore_g37260	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.02	OrthoFinder output from all 47 species
Pnu_g06761	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.03	OrthoFinder output from all 47 species
Pnu_g23612	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014635	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.04	OrthoFinder output from all 47 species
Sam_g07986	No alias	EC_2.2 transferase transferring aldehyde or ketonic...	0.03	OrthoFinder output from all 47 species
Tin_g19065	CLA, DXS, CLA1,...	EC_2.2 transferase transferring aldehyde or ketonic...	0.03	OrthoFinder output from all 47 species
Zm00001e031654_P001	CLA, DXS, CLA1,...	1-deoxy-D-xylulose 5-phosphate synthase (DXS)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	IEA	Interproscan
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016744	transketolase or transaldolase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003840	obsolete gamma-glutamyltransferase activity	IEP	HCCA
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005477	Dxylulose-5-P_synthase	70	355
IPR005475	Transketolase-like_Pyr-bd	392	553

External Links

No external refs found!

AMTR_s00057p00123940 (CLA, DXS, CLA1, DEF,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation