1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00056p00181790

AMTR_s00056p00181790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.161

Description : Protein degradation.peptidase families.cysteine-type peptidase activities.PPPDE-type peptidase


Gene families : OG0000778 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000778_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00181790

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00140900 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.cysteine-type... 0.01 OrthoFinder output from all 47 species
Adi_g059581 No alias deubiquitinase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g00547 No alias deubiquitinase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041538_P003 Zm00001e041538 peptidase (PPPDE) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008580 PPPDE_dom 28 160
No external refs found!