AMTR_s00056p00045910 (SKIP,...)

Aliases : SKIP, evm_27.TU.AmTr_v1.0_scaffold00056.28

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component

Gene families : OG0003767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003767_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00056p00045910

Target	Alias	Description	ECC score	Gene Family Method
Adi_g012475	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Ceric.15G032900.1	SKIP, Ceric.15G032900	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Cre01.g051100	SKIP	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Dcu_g03841	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
GSVIVT01015321001	SKIP	RNA processing.RNA splicing.spliceosome-associated...	0.04	OrthoFinder output from all 47 species
Nbi_g07685	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Ore_g16005	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Ore_g16006	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025529	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Zm00001e023830_P001	SKIP, Zm00001e023830	component SKIP/MAC6 of non-snRNP MOS4-associated complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004015	SKI-int_prot_SKIP_SNW-dom	181	340

External Links

No external refs found!

AMTR_s00056p00045910 (SKIP,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation