1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00055p00196140

AMTR_s00055p00196140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00055.133

Description : Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0003877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003877_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00055p00196140

Target Alias Description ECC score Gene Family Method Actions
AT3G13070 No alias CBS domain-containing protein / transporter associated... 0.03 OrthoFinder output from all 47 species
Aob_g11128 No alias magnesium cation transporter *(MGR) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30754 No alias magnesium cation transporter *(MGR) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12565 No alias magnesium cation transporter *(MGR) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037786001 No alias Putative DUF21 domain-containing protein At3g13070,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g39640.2 LOC_Os03g39640 DUF21 domain-containing protein At1g55930, chloroplastic... 0.02 OrthoFinder output from all 47 species
Lfl_g02274 No alias magnesium cation transporter *(MGR) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10237 No alias magnesium cation transporter *(MGR) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07946 No alias magnesium cation transporter *(MGR) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018936 No alias magnesium cation transporter *(MGR) & original... 0.02 OrthoFinder output from all 47 species
Sam_g35508 No alias magnesium cation transporter *(MGR) & original description: none 0.03 OrthoFinder output from all 47 species
Smo75780 No alias DUF21 domain-containing protein At1g55930, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc07g065310.3.1 Solyc07g065310 Putative DUF21 domain-containing protein At3g13070,... 0.05 OrthoFinder output from all 47 species
Zm00001e004956_P001 Zm00001e004956 DUF21 domain-containing protein At1g55930, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0003995 acyl-CoA dehydrogenase activity IEP HCCA
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000644 CBS_dom 424 478
IPR002550 CNNM 164 342
IPR005170 Transptr-assoc_dom 501 605
No external refs found!