LOC_Os10g02630.1


Description : component U1-70K of U1 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG_01_0004474 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004474_tree ,
OG_02_0005029 (LandPlants) Phylogenetic Tree(s): OG_02_0005029_tree ,
OG_03_0007211 (SeedPlants) Phylogenetic Tree(s): OG_03_0007211_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g02630.1
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00067090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Cpa|evm.model.tig00001333.27 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre16.g656250 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Gb_32834 No alias U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... 0.04 Archaeplastida
MA_104182g0010 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 Archaeplastida
Pp3c7_6390V3.1 No alias U1 small nuclear ribonucleoprotein-70K 0.02 Archaeplastida
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 Archaeplastida
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.06 Archaeplastida
AMTR_s00059p00067090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 LandPlants
Gb_32834 No alias U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... 0.03 LandPlants
MA_104182g0010 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 LandPlants
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 LandPlants
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.06 LandPlants
AMTR_s00059p00067090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 SeedPlants
AT3G50670 U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein-70K 0.01 SeedPlants
MA_104182g0010 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 SeedPlants
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 SeedPlants
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 42 130
IPR000504 RRM_dom 141 210
No external refs found!