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  5. AMTR_s00054p00095350

AMTR_s00054p00095350 (ATHDA14, hda14,...)


Aliases : ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32

Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase


Gene families : OG0006068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00054p00095350

Target Alias Description ECC score Gene Family Method Actions
AT4G33470 ATHDA14, hda14 histone deacetylase 14 0.06 OrthoFinder output from all 47 species
Adi_g102599 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03857 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g36918 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g53688 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67945.t1 ATHDA14, hda14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67947.t1 ATHDA14, hda14,... class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04565 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38945 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g00560 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01026467001 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
LOC_Os12g08220.1 ATHDA14, hda14,... class-II histone deacetylase 0.07 OrthoFinder output from all 47 species
Lfl_g05964 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.05 OrthoFinder output from all 47 species
MA_10435687g0010 ATHDA14, hda14 class-II histone deacetylase 0.03 OrthoFinder output from all 47 species
Mp1g01300.1 ATHDA14, hda14 class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Pir_g19601 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06418 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g009120.3.1 ATHDA14, hda14,... class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Spa_g09807 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11637 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 9 323
No external refs found!