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  5. AMTR_s00053p00175140

AMTR_s00053p00175140 (UBC20,...)


Aliases : UBC20, evm_27.TU.AmTr_v1.0_scaffold00053.121

Description : Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E2 ubiquitin conjugating protein


Gene families : OG0002468 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002468_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00053p00175140
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT1G50490 UBC20 ubiquitin-conjugating enzyme 20 0.07 OrthoFinder output from all 47 species
Als_g05340 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03142.t1 UBC19, Aspi01Gene03142 E2 ubiquitin-conjugating protein & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61364.t1 UBC20, Aspi01Gene61364 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G000500.1 UBC20, Ceric.11G000500 E2 ubiquitin-conjugating protein & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G015500.1 UBC19, Ceric.25G015500 E2 ubiquitin-conjugating protein & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g30508 UBC19 E2 ubiquitin-conjugating protein & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g20005 UBC19 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031547001 UBC20 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.06 OrthoFinder output from all 47 species
LOC_Os01g16650.1 UBC20, LOC_Os01g16650 E2 ubiquitin conjugating protein (APC/C) 0.13 OrthoFinder output from all 47 species
Len_g15646 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11955 UBC19 E2 ubiquitin-conjugating protein & original description: none 0.09 OrthoFinder output from all 47 species
Mp3g21700.1 UBC19 E2 ubiquitin conjugating protein (APC/C) 0.02 OrthoFinder output from all 47 species
Msp_g02664 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g38909 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.11 OrthoFinder output from all 47 species
Ore_g44236 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g44237 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09612 No alias E2 ubiquitin-conjugating protein & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37401 No alias E2 ubiquitin-conjugating protein & original description: none 0.08 OrthoFinder output from all 47 species
Solyc11g065190.3.1 UBC20, Solyc11g065190 E2 ubiquitin conjugating protein (APC/C) 0.13 OrthoFinder output from all 47 species
Spa_g37108 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48430 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e017345_P001 UBC20, Zm00001e017345 E2 ubiquitin conjugating protein (APC/C) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016881 acid-amino acid ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 47 182
No external refs found!