1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00050p00210650

AMTR_s00050p00210650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00050.72

Description : Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana


Gene families : OG0000196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000196_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00050p00210650

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00238210 evm_27.TU.AmTr_v1... Probable disease resistance protein At4g14610... 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00088510 evm_27.TU.AmTr_v1... No description available 0.09 OrthoFinder output from all 47 species
AMTR_s00101p00133980 RFL1,... Disease resistance protein RFL1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00121p00125720 evm_27.TU.AmTr_v1... Probable disease resistance protein At1g61180... 0.02 OrthoFinder output from all 47 species
AT1G12210 RFL1 RPS5-like 1 0.03 OrthoFinder output from all 47 species
AT1G12220 RPS5 Disease resistance protein (CC-NBS-LRR class) family 0.04 OrthoFinder output from all 47 species
AT1G12280 No alias LRR and NB-ARC domains-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
AT1G12290 No alias Disease resistance protein (CC-NBS-LRR class) family 0.03 OrthoFinder output from all 47 species
AT1G61190 No alias LRR and NB-ARC domains-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
AT1G61310 No alias LRR and NB-ARC domains-containing disease resistance protein 0.03 OrthoFinder output from all 47 species
AT1G63360 No alias Disease resistance protein (CC-NBS-LRR class) family 0.02 OrthoFinder output from all 47 species
AT5G43730 No alias Disease resistance protein (CC-NBS-LRR class) family 0.04 OrthoFinder output from all 47 species
Aob_g32394 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g57175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014595001 No alias Disease resistance protein At4g27190 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
GSVIVT01017142001 RPS5 Disease resistance protein SUMM2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01017232001 No alias Disease resistance protein SUMM2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01038391001 No alias Probable disease resistance protein At1g12290... 0.04 OrthoFinder output from all 47 species
Gb_01077 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_04767 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_08717 RPS5 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_12853 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_12854 RPS2 Disease resistance protein SUMM2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_16713 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_18201 No alias Probable disease resistance protein At1g61180... 0.02 OrthoFinder output from all 47 species
Gb_22369 RPS5 Disease resistance protein RPS5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_26475 RPS5 Putative disease resistance protein RGA3 OS=Solanum... 0.04 OrthoFinder output from all 47 species
LOC_Os01g57870.1 RPS2, LOC_Os01g57870 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
LOC_Os01g58530.1 RFL1, LOC_Os01g58530 Disease resistance protein SUMM2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g10900.1 RPS2, LOC_Os03g10900 Disease resistance protein RPS5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43440.1 RPS2, LOC_Os04g43440 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os09g14060.1 LOC_Os09g14060 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10265639g0010 No alias Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_354579g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_355252g0010 RPS2 Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_378728g0010 No alias Disease resistance protein RPS2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_562728g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_81901g0010 No alias Probable disease resistance protein At5g63020... 0.04 OrthoFinder output from all 47 species
MA_9565901g0010 No alias Probable disease resistance protein At1g61310... 0.08 OrthoFinder output from all 47 species
Pir_g37325 RFL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c19_2470V3.1 Pp3c19_2470 NB-ARC domain-containing disease resistance protein 0.03 OrthoFinder output from all 47 species
Solyc08g005500.4.1 Solyc08g005500 Putative late blight resistance protein homolog R1A-6... 0.04 OrthoFinder output from all 47 species
Solyc08g007250.3.1 Solyc08g007250 Disease resistance protein At4g27190 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR025875 Leu-rich_rpt_4 365 404
IPR002182 NB-ARC 189 329
No external refs found!