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  5. AMTR_s00049p00127890

AMTR_s00049p00127890 (PGP18,...)


Aliases : PGP18, evm_27.TU.AmTr_v1.0_scaffold00049.103

No description available


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00049p00127890
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Aop_g22138 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68609 PGP13 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G047700.1 Ceric.36G047700 not classified & original description: pacid=50569224... 0.03 OrthoFinder output from all 47 species
Dde_g46023 PGP13 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Gb_08615 PGP11 ABC transporter B family member 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_08616 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_10431815g0020 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_9589971g0010 PGP10 ABC transporter B family member 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g16060.1 PGP11 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Msp_g33671 PGP10 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28031 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28855 PGP10 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57324 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60074 PGP11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_16450V3.1 ABCB19,... ATP binding cassette subfamily B19 0.02 OrthoFinder output from all 47 species
Ppi_g03284 PGP13 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03992 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g07008 ABCB14, ATABCB14, PGP14 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017089 glycolipid transfer activity IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0046836 glycolipid transport IEP HCCA
MF GO:0051861 glycolipid binding IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!