AMTR_s00048p00200340 (NCLPP4, CLPP4,...)


Aliases : NCLPP4, CLPP4, evm_27.TU.AmTr_v1.0_scaffold00048.166

Description : ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000552 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00200340

Target Alias Description ECC score Gene Family Method Actions
AT1G02560 NCLPP1, CLPP5, NCLPP5 nuclear encoded CLP protease 5 0.04 OrthoFinder output from all 47 species
Adi_g016781 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Adi_g107266 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ala_g13540 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Als_g02394 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Aop_g09541 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Aop_g26326 CLPP2, NCLPP7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41629.t1 CLPP2, NCLPP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02522 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ceric.32G040700.1 NCLPP4, CLPP4,... proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.201 NCLPP4, CLPP4 ATP-dependent Clp protease proteolytic subunit 4,... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021522.2 NCLPP1, CLPP5, NCLPP5 ATP-dependent Clp protease proteolytic subunit 5,... 0.02 OrthoFinder output from all 47 species
Cre12.g486100 NCLPP1, CLPP5, NCLPP5 Protein degradation.peptidase families.serine-type... 0.01 OrthoFinder output from all 47 species
Cre12.g500950 NCLPP4, CLPP4 Protein degradation.peptidase families.serine-type... 0.01 OrthoFinder output from all 47 species
Dac_g01402 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Dcu_g03766 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Dde_g02659 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Dde_g12975 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ehy_g00664 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ehy_g11662 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ehy_g22353 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
GSVIVT01030894001 CLPP3, NCLPP3 Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
LOC_Os10g43050.1 NCLPP4, CLPP4,... proteolytic core component ClpP1/3-6 of chloroplast... 0.03 OrthoFinder output from all 47 species
Len_g02667 CLPP2, NCLPP7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37808 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
MA_806g0010 NCLPP1, CLPP5, NCLPP5 ATP-dependent Clp protease proteolytic subunit 5,... 0.03 OrthoFinder output from all 47 species
Msp_g00395 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Msp_g25918 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Nbi_g12183 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Nbi_g12472 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Pir_g00910 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Pir_g04342 CLPP2, NCLPP7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10039 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Pir_g14966 CLPP2, NCLPP7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003217 CLPP2, NCLPP7 not classified & original description: CDS=1-687 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017790 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Zm00001e015198_P001 CLPP2, NCLPP7,... ATP-dependent Clp protease proteolytic subunit 2,... 0.03 OrthoFinder output from all 47 species
Zm00001e023057_P001 CLPP2, NCLPP7,... ATP-dependent Clp protease proteolytic subunit 2,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 1 118
No external refs found!