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  5. AMTR_s00048p00132600

AMTR_s00048p00132600 (EMB976,...)


Aliases : EMB976, evm_27.TU.AmTr_v1.0_scaffold00048.78

Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00132600
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT5G27270 EMB976 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07260 No alias plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13289 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01274 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G008200.1 EMB976, Ceric.11G008200 plastidial splicing factor *(PDM4) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g11292 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.08 OrthoFinder output from all 47 species
Gb_15749 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
LOC_Os06g02120.1 EMB976, LOC_Os06g02120 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
MA_10434955g0010 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
Pir_g07531 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51412 No alias plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Smo110655 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Solyc03g097000.3.1 EMB976, Solyc03g097000 Pentatricopeptide repeat-containing protein At5g27270... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 352 380
IPR002885 Pentatricopeptide_repeat 422 447
IPR002885 Pentatricopeptide_repeat 527 554
IPR002885 Pentatricopeptide_repeat 563 584
IPR002885 Pentatricopeptide_repeat 386 415
IPR002885 Pentatricopeptide_repeat 630 654
IPR002885 Pentatricopeptide_repeat 491 511
IPR002885 Pentatricopeptide_repeat 904 932
IPR002885 Pentatricopeptide_repeat 940 969
IPR002885 Pentatricopeptide_repeat 282 323
IPR002885 Pentatricopeptide_repeat 762 807
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 696 738
IPR002885 Pentatricopeptide_repeat 835 877
No external refs found!