Sequence Description Alias PCC hrr AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase RIF10, PNP, evm_27.TU.AmTr_v1.0_scaffold00004.78 0.9468163841196335 1 AMTR_s00003p00212560 emb1441, evm_27.TU.AmTr_v1.0_scaffold00003.204 0.9431104363763034 3 AMTR_s00004p00118340 evm_27.TU.AmTr_v1.0_scaffold00004.101 0.940867236926716 11 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.9387715083009127 4 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9376148053678413 5 AMTR_s00058p00186720 Protein KINESIN LIGHT CHAIN-RELATED 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.182 0.9369224227638722 6 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9341112614127149 7 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.93263165132031 8 AMTR_s00002p00268330 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase) evm_27.TU.AmTr_v1.0_scaffold00002.535 0.9313900616511674 60 AMTR_s00026p00019230 DNA repair protein UVH3 OS=Arabidopsis thaliana UVR1, UVH3, evm_27.TU.AmTr_v1.0_scaffold00026.2 0.9309749486911599 59 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9272644809123419 34 AMTR_s00011p00265800 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana EMB1270, evm_27.TU.AmTr_v1.0_scaffold00011.222 0.9271712192451377 12 AMTR_s00056p00038090 RNA processing.ribonuclease activities.RNase Z endoribonuclease TRZ4, evm_27.TU.AmTr_v1.0_scaffold00056.21 0.9261536947978689 56 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9258700293431379 63 AMTR_s00092p00052470 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana 0.924103191160098 15 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor VAC1, ECB2, ATECB2 0.9233909059017853 16 AMTR_s00110p00154620 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana emb2458, evm_27.TU.AmTr_v1.0_scaffold00110.130 0.9191590825816545 79 AMTR_s00080p00074320 Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00080.23 0.9189137595280757 47 AMTR_s00057p00188930 GTP-binding protein OBGC, chloroplastic OS=Arabidopsis thaliana CPSAR1, EMB269, ATOBGC, evm_27.TU.AmTr_v1.0_scaffold00057.204 0.9185280267466217 19 AMTR_s00063p00087380 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00063.12 0.9181267818181446 20 AMTR_s00049p00131450 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana DOT4, evm_27.TU.AmTr_v1.0_scaffold00049.110 0.9163124584422124 21 AMTR_s00042p00226140 evm_27.TU.AmTr_v1.0_scaffold00042.76 0.915612174130194 24 AMTR_s00040p00198390 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00040.199 0.9143849440598714 79 AMTR_s00058p00198540 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00058.200 0.9143325848123858 24 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226, evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9141647760398612 28 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase SEX1, SOP1, GWD, SOP, GWD1, evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9133116474632343 27 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase ECHID, DHNS, evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9128590022664083 28 AMTR_s00112p00086310 evm_27.TU.AmTr_v1.0_scaffold00112.21 0.9122744944496972 29 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9122098122011355 57 AMTR_s00056p00190910 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00056.181 0.9121894710365995 31 AMTR_s00004p00110090 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VI kinase families.LRR-VI-1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.89 0.9118010335939587 37 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component emb1211, evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9111473736388721 63 AMTR_s00142p00033030 MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum MFP1, evm_27.TU.AmTr_v1.0_scaffold00142.14 0.9107066907397696 34 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) PDE319, SCA3, evm_27.TU.AmTr_v1.0_scaffold00065.7 0.9099367623407894 35 AMTR_s00088p00169250 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00088.143 0.9098338167544822 36 AMTR_s00002p00226970 evm_27.TU.AmTr_v1.0_scaffold00002.252 0.9093262829883022 38 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9089411831975038 53 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120, evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9080976506157872 43 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9080751458642935 95 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9071352988165663 72 AMTR_s00197p00040880 Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00197.21 0.9059774212860194 91 AMTR_s00004p00076010 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.59 0.905721059772282 47 AMTR_s00014p00068600 Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana REME1, evm_27.TU.AmTr_v1.0_scaffold00014.19 0.9050860005818123 48 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein DRP5B, ARC5, evm_27.TU.AmTr_v1.0_scaffold00121.36 0.9041727976261279 50 AMTR_s00069p00204310 evm_27.TU.AmTr_v1.0_scaffold00069.223 0.9035651192789146 73 AMTR_s00045p00114550 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00045.110 0.9032626041157065 53 AMTR_s00129p00082590 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00129.60 0.9025824983765153 54 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays EMB1865, evm_27.TU.AmTr_v1.0_scaffold00079.39 0.9021444716391218 55 AMTR_s00029p00211750 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase TADA, ATTADA, evm_27.TU.AmTr_v1.0_scaffold00029.309 0.9020248968629255 56 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00078.76 0.9012682769832918 59 AMTR_s00010p00258180 EMB2756, evm_27.TU.AmTr_v1.0_scaffold00010.410 0.9011862266112913 90 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9009207941609481 61 AMTR_s00061p00066220 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.41 0.9005238475346031 63 AMTR_s00029p00248990 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component evm_27.TU.AmTr_v1.0_scaffold00029.453 0.898811469483769 67 AMTR_s00009p00241130 Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.214 0.8983353867427533 68 AMTR_s00065p00199990 Chromatin organisation.DNA methylation.non-canonical RNA-directed DNA methylation.SGS3 stabilization factor ATSGS3, SGS3, evm_27.TU.AmTr_v1.0_scaffold00065.182 0.8977596077844954 72 AMTR_s00061p00209430 CIP4, evm_27.TU.AmTr_v1.0_scaffold00061.259 0.8975314553534399 73 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.8966866831655433 76 AMTR_s00079p00185530 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS1 splicing factor ATCRS1, CRS1, evm_27.TU.AmTr_v1.0_scaffold00079.106 0.8964373009751024 78 AMTR_s00085p00151790 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B-type regulatory component ATB BETA, evm_27.TU.AmTr_v1.0_scaffold00085.94 0.8955167148176155 95 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.8949107443046731 82 AMTR_s00007p00152220 Nucleotide metabolism.purines.salvage pathway.AMP deaminase activities.membrane-associated AMP deaminase FAC1, ATAMPD, evm_27.TU.AmTr_v1.0_scaffold00007.112 0.8941871271533173 84 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.8940342513373932 91 AMTR_s00101p00092980 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana FAS4, ATFAS4, evm_27.TU.AmTr_v1.0_scaffold00101.70 0.8940284448765281 87 AMTR_s00058p00185710 evm_27.TU.AmTr_v1.0_scaffold00058.180 0.8938611056111386 88 AMTR_s00024p00162030 Protein trichome birefringence OS=Arabidopsis thaliana TBR 0.8937077130691741 90 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase FC-II, FC2, ATFC-II, evm_27.TU.AmTr_v1.0_scaffold00060.3 0.8935651157591067 92 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.89337448029712 95 AMTR_s00061p00196410 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond LACS8, evm_27.TU.AmTr_v1.0_scaffold00061.230 0.893113528757485 96 AMTR_s00071p00100010 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00071.77 0.8929322721445532 99