AMTR_s00048p00035310 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.9

No description available


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00035310

Target Alias Description ECC score Gene Family Method Actions
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.08 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42699.t1 Aspi01Gene42699 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.03 OrthoFinder output from all 47 species
Ceric.21G079300.1 Ceric.21G079300 not classified & original description: pacid=50602615... 0.06 OrthoFinder output from all 47 species
Cre17.g728250 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g20978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_15429 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_23775 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_35998 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g27110.1 LOC_Os02g27110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g27130.1 LOC_Os02g27130 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_58863g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g07580.2 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g12905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005700 No alias not classified & original description: CDS=17-12964 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018244 No alias not classified & original description: CDS=306-11297 0.04 OrthoFinder output from all 47 species
Sam_g17487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo444980 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc08g077490.2.1 Solyc08g077490 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc09g009350.2.1 Solyc09g009350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc09g009370.4.1 Solyc09g009370 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g17786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e024722_P001 Zm00001e024722 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008381 mechanosensitive monoatomic ion channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR026854 VPS13-like_N 3 115
IPR009543 VPS13_VAB 3335 3499
IPR009291 Vps62 1993 2124
IPR009291 Vps62 4241 4306
IPR009291 Vps62 2221 2419
No external refs found!