AMTR_s00048p00030920 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.6

Description : Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor

Gene families : OG0002088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00030920
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT5G51110	No alias	Transcriptional coactivator/pterin dehydratase	0.03	OrthoFinder output from all 47 species
Adi_g046909	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Aev_g01920	No alias	EC_4.2 carbon-oxygen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06901	No alias	EC_4.2 carbon-oxygen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g04878	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Aop_g01993	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene54106.t1	Aspi01Gene54106	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Cba_g03739	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ceric.14G065400.1	Ceric.14G065400	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Dac_g02570	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Dde_g33347	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Ehy_g03244	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Mp2g24300.1	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.03	OrthoFinder output from all 47 species
Nbi_g03969	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ore_g04769	No alias	EC_4.2 carbon-oxygen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g09993	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ppi_g04239	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.06	OrthoFinder output from all 47 species
Smo97725	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0034311	diol metabolic process	None	Extended
BP	GO:0034312	diol biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042558	pteridine-containing compound metabolic process	None	Extended
BP	GO:0042559	pteridine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046146	tetrahydrobiopterin metabolic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046173	polyol biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001533	Pterin_deHydtase	107	205

External Links

No external refs found!

AMTR_s00048p00030920 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation