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  5. AMTR_s00047p00074820

AMTR_s00047p00074820 (SVR7,...)


Aliases : SVR7, evm_27.TU.AmTr_v1.0_scaffold00047.18

Description : Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00047p00074820

Target Alias Description ECC score Gene Family Method Actions
Adi_g059010 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39761.t1 Aspi01Gene39761 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.03 OrthoFinder output from all 47 species
GSVIVT01003496001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Ore_g12890 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.02 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 470 498
IPR002885 Pentatricopeptide_repeat 395 440
IPR002885 Pentatricopeptide_repeat 325 372
IPR002885 Pentatricopeptide_repeat 186 229
IPR002885 Pentatricopeptide_repeat 254 301
No external refs found!