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  5. AMTR_s00046p00228230

AMTR_s00046p00228230 (emb1473,...)


Aliases : emb1473, evm_27.TU.AmTr_v1.0_scaffold00046.169

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component


Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00228230
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT1G78630 emb1473 Ribosomal protein L13 family protein 0.11 OrthoFinder output from all 47 species
Adi_g087764 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aev_g00534 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ala_g09807 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Als_g17613 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g06248 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g00301 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aspi01Gene67481.t1 emb1473, Aspi01Gene67481 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0224.g058887 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Cba_g03008 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.14G072800.1 emb1473, Ceric.14G072800 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.24 emb1473 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre06.g264350 emb1473 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Dcu_g00726 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g01255 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g04479 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01014101001 emb1473 Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
Gb_28095 emb1473 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os01g54540.1 emb1473, LOC_Os01g54540 component psRPL13 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Len_g01005 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Lfl_g03832 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10433400g0010 emb1473 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
MA_27171g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp3g07030.1 emb1473 component psRPL13 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Msp_g09623 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g04003 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g11308 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pir_g10608 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pnu_g03358 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g11794 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018050 No alias not classified & original description: CDS=57-500 0.02 OrthoFinder output from all 47 species
Sam_g16893 No alias component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc07g062190.4.1 emb1473, Solyc07g062190 component psRPL13 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Solyc12g014390.3.1 emb1473, Solyc12g014390 component psRPL13 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Spa_g21366 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g09876 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005342 organic acid transmembrane transporter activity IEP HCCA
MF GO:0005343 organic acid:sodium symporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008508 bile acid:sodium symporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015125 bile acid transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:monoatomic cation symporter activity IEP HCCA
MF GO:0015355 secondary active monocarboxylate transmembrane transporter activity IEP HCCA
MF GO:0015370 solute:sodium symporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140161 monocarboxylate:sodium symporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 100 226
No external refs found!