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  5. AMTR_s00046p00133890

AMTR_s00046p00133890 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.67

No description available


Gene families : OG0004355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004355_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00133890

Target Alias Description ECC score Gene Family Method Actions
Adi_g086850 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species
Cba_g36944 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species
Ceric.23G060100.1 Ceric.23G060100 component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.04 OrthoFinder output from all 47 species
Dcu_g33198 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.05 OrthoFinder output from all 47 species
GSVIVT01015594001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os09g03600.1 LOC_Os09g03600 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_160950g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g26310 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Pir_g13608 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species
Ppi_g16066 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.03 OrthoFinder output from all 47 species
Solyc07g007890.3.1 Solyc07g007890 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Tin_g22557 No alias component *(NOT10) of mRNA deadenylation CCR4-NOT... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001440 TPR_1 394 418
No external refs found!