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  5. AMTR_s00045p00163960

AMTR_s00045p00163960 (TPR5,...)


Aliases : TPR5, evm_27.TU.AmTr_v1.0_scaffold00045.188

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.RPAP3 polymerase- II regulator protein


Gene families : OG0003637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00163960
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Cba_g32101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G085400.1 TPR5, Ceric.20G085400 polymerase-II assembly factor *(RPAP3) & original... 0.02 OrthoFinder output from all 47 species
Cre02.g084900 TPR5 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Gb_00083 TPR5 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_54337g0010 TOC64-V,... Outer envelope protein 64, mitochondrial OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp5g07360.1 TPR5 RPAP3 polymerase-II assembly factor 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012173 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.02 OrthoFinder output from all 47 species
Smo409308 TPR5 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0097354 prenylation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR025986 RPAP3-like_C 343 432
IPR001440 TPR_1 168 201
No external refs found!