Sequence Description Alias PCC hrr AMTR_s00025p00131930 evm_27.TU.AmTr_v1.0_scaffold00025.131 0.9675128662243186 1 AMTR_s00059p00131310 Methyltransferase-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.108 0.957019498027772 7 AMTR_s00148p00070910 Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00148.45 0.9528147859104376 14 AMTR_s00068p00178640 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS18 component evm_27.TU.AmTr_v1.0_scaffold00068.135 0.9515920576470559 5 AMTR_s00007p00268900 F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.398 0.9501997716425054 5 AMTR_s00002p00268800 evm_27.TU.AmTr_v1.0_scaffold00002.541 0.949617379044062 6 AMTR_s00019p00204140 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS52/POK component POK, TTD8, ATVPS52, evm_27.TU.AmTr_v1.0_scaffold00019.240 0.9492204409084195 7 AMTR_s00066p00131520 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.125 0.9490845800328884 10 AMTR_s00001p00273020 External stimuli response.biotic stress.pathogen effector.NLR effector receptor evm_27.TU.AmTr_v1.0_scaffold00001.586 0.9484643790663236 27 AMTR_s00002p00236270 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00002.278 0.9473445941131342 10 AMTR_s00078p00067180 Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana EMB2261, evm_27.TU.AmTr_v1.0_scaffold00078.40 0.9472612023186645 11 AMTR_s00002p00270610 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade J phosphatase evm_27.TU.AmTr_v1.0_scaffold00002.591 0.9469475037500227 12 AMTR_s00061p00213120 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00061.265 0.9457059122345367 29 AMTR_s00083p00130670 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase MKK3, ATMKK3, evm_27.TU.AmTr_v1.0_scaffold00083.35 0.9445816517792925 29 AMTR_s00111p00067270 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00111.37 0.9442488637543907 15 AMTR_s00197p00038370 evm_27.TU.AmTr_v1.0_scaffold00197.18 0.9429380794469944 20 AMTR_s00171p00062850 evm_27.TU.AmTr_v1.0_scaffold00171.47 0.9428954747751416 17 AMTR_s00009p00265260 evm_27.TU.AmTr_v1.0_scaffold00009.380 0.9426016895196828 18 AMTR_s00023p00193470 Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.133 0.9410590121099356 19 AMTR_s00010p00241770 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial glucanotransferase DPE1, evm_27.TU.AmTr_v1.0_scaffold00010.311 0.9409793952281249 28 AMTR_s00030p00126060 Cell cycle.interphase.DNA replication.preinitiation.TSK chromatin stabilizing factor TSK, BRU1, MGO3, evm_27.TU.AmTr_v1.0_scaffold00030.75 0.9408410456658735 21 AMTR_s00022p00212920 DNA topoisomerase 6 subunit B OS=Oryza sativa subsp. indica TOP6B, BIN3, HYP6, RHL3, ATTOP6B, evm_27.TU.AmTr_v1.0_scaffold00022.251 0.9405458574056427 37 AMTR_s00095p00091200 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00095.52 0.9402102570431569 23 AMTR_s00041p00059380 evm_27.TU.AmTr_v1.0_scaffold00041.32 0.9396541259144433 39 AMTR_s00059p00100910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00059.74 0.9394165672386292 25 AMTR_s00033p00228890 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.alpha subunit ATRGTA1, RGTA1, evm_27.TU.AmTr_v1.0_scaffold00033.220 0.9393358648832956 26 AMTR_s00009p00251110 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.2 protease TPP2, evm_27.TU.AmTr_v1.0_scaffold00009.258 0.9390289022408005 31 AMTR_s00008p00223790 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP6/CTR9 component evm_27.TU.AmTr_v1.0_scaffold00008.143 0.9380152209703652 28 AMTR_s00169p00027470 Cell cycle.interphase.DNA replication.telomere replication.telomere integrity maintenance complex.CTC1 component CTC1, ATCTC1, evm_27.TU.AmTr_v1.0_scaffold00169.14 0.9371063675994314 29 AMTR_s00025p00200390 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase HEN2, evm_27.TU.AmTr_v1.0_scaffold00025.254 0.9364987111293767 44 AMTR_s00059p00170320 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX-type) evm_27.TU.AmTr_v1.0_scaffold00059.165 0.9360820834012135 31 AMTR_s00049p00181700 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC6 component SEC6, evm_27.TU.AmTr_v1.0_scaffold00049.176 0.9354202104189857 32 AMTR_s00149p00069080 DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.47 0.9349424699148208 33 AMTR_s00024p00249000 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.RecG-type DNA translocase evm_27.TU.AmTr_v1.0_scaffold00024.324 0.9348152895439847 34 AMTR_s00037p00181430 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB activating E1 complex.small component (AXR1/AXL) AXR1, evm_27.TU.AmTr_v1.0_scaffold00037.87 0.9346174762085047 35 AMTR_s00045p00091940 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.85 0.9345180268831436 36 AMTR_s00002p00261540 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.453 0.9342990145161614 48 AMTR_s00066p00206210 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.282 0.9336628547100025 38 AMTR_s00055p00187070 Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana EDM2, evm_27.TU.AmTr_v1.0_scaffold00055.116 0.9335845101713843 39 AMTR_s00059p00178020 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC3 component SEC3A, evm_27.TU.AmTr_v1.0_scaffold00059.189 0.9334018464905703 54 AMTR_s00026p00019230 DNA repair protein UVH3 OS=Arabidopsis thaliana UVR1, UVH3, evm_27.TU.AmTr_v1.0_scaffold00026.2 0.9332627081125846 47 AMTR_s00095p00178810 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MAG2 component MAG2, evm_27.TU.AmTr_v1.0_scaffold00095.158 0.9326264909428572 42 AMTR_s00023p00062480 Protein modification.acetylation.NatB-type N-terminal acetylase complex.NAA25 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00023.28 0.9322341863915746 61 AMTR_s00047p00213160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor evm_27.TU.AmTr_v1.0_scaffold00047.154 0.9321118132750394 44 AMTR_s00039p00144340 evm_27.TU.AmTr_v1.0_scaffold00039.98 0.9313017287571846 45 AMTR_s00010p00217580 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component evm_27.TU.AmTr_v1.0_scaffold00010.224 0.9308742425750279 46 AMTR_s00002p00268330 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase) evm_27.TU.AmTr_v1.0_scaffold00002.535 0.9300898473745726 67 AMTR_s00024p00070750 evm_27.TU.AmTr_v1.0_scaffold00024.29 0.9299576587042653 48 AMTR_s00007p00224640 GTP-binding protein At2g22870 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.219 0.9298578128790429 49 AMTR_s00032p00190520 Protein degradation.ER-associated protein degradation (ERAD) machinery.PNG1 peptide:N-glycanase AtPNG1, PNG1, evm_27.TU.AmTr_v1.0_scaffold00032.172 0.9298499943090459 50 AMTR_s00025p00159760 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor PRHA, evm_27.TU.AmTr_v1.0_scaffold00025.181 0.9294703540918833 51 AMTR_s00137p00063430 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00137.24 0.9294090514196856 52 AMTR_s00095p00033450 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS2 rRNA removal.LAS1 pre-rRNA cleavage factor evm_27.TU.AmTr_v1.0_scaffold00095.14 0.9292052324188265 53 AMTR_s00038p00133080 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component evm_27.TU.AmTr_v1.0_scaffold00038.78 0.9285052358871231 54 AMTR_s00037p00070040 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00037.19 0.9280179207159059 83 AMTR_s00026p00063570 Chromatin organisation.histone modifications.histone acetylation.CBP/p300 histone acetyltransferase ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00026.20 0.9279968643737102 56 AMTR_s00049p00176850 External stimuli response.biotic stress.pathogen-associated molecular pattern (PAMP).PTI (pattern-triggered immunity) network.bacterial elicitor response.RGS1 G-protein immune signalling regulator RGS1, ATRGS1, evm_27.TU.AmTr_v1.0_scaffold00049.169 0.9278367159564421 57 AMTR_s00045p00062170 RNA processing.RNA modification.rRNA/tRNA methylation.TRM13 tRNA adenosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00045.45 0.9277335206632172 58 AMTR_s00001p00199010 evm_27.TU.AmTr_v1.0_scaffold00001.198 0.9274840369819637 59 AMTR_s00067p00129330 Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana emb1974, evm_27.TU.AmTr_v1.0_scaffold00067.111 0.9274254227812784 60 AMTR_s00038p00208310 Protein WHATS THIS FACTOR 1 OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00038.162 0.9273222057240097 61 AMTR_s00090p00083520 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.29 0.9272242097062428 75 AMTR_s00038p00178460 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1) ZYP1a, ZYP1, evm_27.TU.AmTr_v1.0_scaffold00038.120 0.9270313674196549 63 AMTR_s00025p00136470 Redox homeostasis.low-molecular-weight scavengers.glutathione metabolism.glutathione biosynthesis.glutathione synthetase (GS) GSHB, GSH2, evm_27.TU.AmTr_v1.0_scaffold00025.139 0.9258949803560523 64 AMTR_s00029p00164810 evm_27.TU.AmTr_v1.0_scaffold00029.213 0.9254515362952943 65 AMTR_s00003p00202580 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase G6PD4, evm_27.TU.AmTr_v1.0_scaffold00003.190 0.925336077797999 66 AMTR_s00039p00125380 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.MSH1 factor CHM, MSH1, ATMSH1, CHM1, evm_27.TU.AmTr_v1.0_scaffold00039.79 0.9249040933446795 95 AMTR_s00001p00272880 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,2-alpha-fucosidase FUC95A, evm_27.TU.AmTr_v1.0_scaffold00001.572 0.9244775934231886 68 AMTR_s00183p00036690 evm_27.TU.AmTr_v1.0_scaffold00183.15 0.9243405622210212 69 AMTR_s00044p00041520 evm_27.TU.AmTr_v1.0_scaffold00044.15 0.9242735838980835 75 AMTR_s00032p00169270 evm_27.TU.AmTr_v1.0_scaffold00032.140 0.9239728889945082 71 AMTR_s00103p00089080 Protein degradation.peptidase families.metallopeptidase activities.M16 families.Nardilysin-like peptidase evm_27.TU.AmTr_v1.0_scaffold00103.49 0.9237597352237533 72 AMTR_s00042p00025510 Chromatin organisation.histone modifications.histone arginine methylation.TDRD3-TOP3B methyl-arginine reader complex.TDRD3 reader component evm_27.TU.AmTr_v1.0_scaffold00042.5 0.9235585551753942 73 AMTR_s00060p00170530 evm_27.TU.AmTr_v1.0_scaffold00060.107 0.92351383233229 74 AMTR_s00066p00192420 evm_27.TU.AmTr_v1.0_scaffold00066.247 0.9234682426738029 75 AMTR_s00092p00091040 evm_27.TU.AmTr_v1.0_scaffold00092.51 0.9230106486237281 76 AMTR_s00065p00048130 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.24 0.9227999632807592 95 AMTR_s00025p00136600 Redox homeostasis.low-molecular-weight scavengers.glutathione metabolism.glutathione biosynthesis.glutathione synthetase (GS) GSHB, GSH2, evm_27.TU.AmTr_v1.0_scaffold00025.140 0.922746168836188 78 AMTR_s00011p00029200 evm_27.TU.AmTr_v1.0_scaffold00011.5 0.92251982817102 79 AMTR_s00053p00126930 evm_27.TU.AmTr_v1.0_scaffold00053.75 0.9224227758891002 80 AMTR_s00040p00182290 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.HDA9 component HDA09, HDA9, evm_27.TU.AmTr_v1.0_scaffold00040.176 0.9224066741445083 81 AMTR_s00163p00014030 Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00163.1 0.9220529308314876 82 AMTR_s00003p00270420 0.9217941256041282 83 AMTR_s00004p00118340 evm_27.TU.AmTr_v1.0_scaffold00004.101 0.9216066809242149 84 AMTR_s00002p00270390 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor ATB2, evm_27.TU.AmTr_v1.0_scaffold00002.582 0.9207565496769617 85 AMTR_s00085p00149180 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.DNA helicase (RCK/MER3) RCK, MER3, evm_27.TU.AmTr_v1.0_scaffold00085.93 0.920227442546819 95 AMTR_s00074p00172480 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00074.85 0.9200912549213557 88 AMTR_s00082p00122660 evm_27.TU.AmTr_v1.0_scaffold00082.26 0.919326725777733 89 AMTR_s00046p00080660 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase BRIZ2, evm_27.TU.AmTr_v1.0_scaffold00046.35 0.9189197190684484 91 AMTR_s00024p00229020 evm_27.TU.AmTr_v1.0_scaffold00024.234 0.9188868032293286 92 AMTR_s00049p00016550 evm_27.TU.AmTr_v1.0_scaffold00049.6 0.9184428795563669 93 AMTR_s00007p00226740 Multi-process regulation.SnRK1 metabolic regulator system.SnRK1 kinase complex.alpha catalytic subunit SNRK1.2, AKIN11, KIN11, ATKIN11, evm_27.TU.AmTr_v1.0_scaffold00007.226 0.9183481845679023 94 AMTR_s00092p00120720 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-v-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00092.84 0.91813362699542 95 AMTR_s00009p00268760 Multi-process regulation.circadian clock.TOC1 evening oscillator component APRR1, AtTOC1, TOC1, PRR1, evm_27.TU.AmTr_v1.0_scaffold00009.431 0.9180152298530332 96 AMTR_s00008p00266190 evm_27.TU.AmTr_v1.0_scaffold00008.227 0.9178738402798161 97 AMTR_s00004p00117700 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator complex.DRB4 component DRB3, evm_27.TU.AmTr_v1.0_scaffold00004.100 0.9174171931393481 99