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  5. AMTR_s00045p00149950

AMTR_s00045p00149950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.161

Description : DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica


Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00149950

Target Alias Description ECC score Gene Family Method Actions
AT3G06980 No alias DEA(D/H)-box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
Ala_g03135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G050700.1 Ceric.28G050700 not classified & original description: pacid=50570551... 0.04 OrthoFinder output from all 47 species
Cre10.g436650 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g22864 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g01830.1 LOC_Os03g01830 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Lfl_g37545 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g13305 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g30132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005945 No alias not classified & original description: CDS=228-2279 0.04 OrthoFinder output from all 47 species
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g15666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e039095_P002 Zm00001e039095 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 582 654
IPR011545 DEAD/DEAH_box_helicase_dom 316 488
No external refs found!