AMTR_s00045p00116920 (SECA1, AtcpSecA,...)

Aliases : SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113

Description : Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component

Gene families : OG0001541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00045p00116920
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT4G01800	SECA1, AtcpSecA, AGY1	Albino or Glassy Yellow 1	0.08	OrthoFinder output from all 47 species
Adi_g007063	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Aev_g01548	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.02	OrthoFinder output from all 47 species
Ala_g03630	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.07	OrthoFinder output from all 47 species
Ala_g19639	SECA2	component *(SecA2) of inner envelope Sec2 post-import...	0.03	OrthoFinder output from all 47 species
Ala_g26842	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.11	OrthoFinder output from all 47 species
Als_g14938	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Aob_g02321	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Aop_g13757	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Aop_g60479	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Aspi01Gene56831.t1	SECA2, Aspi01Gene56831	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0022.g016205	SECA2	component *(SecA2) of inner envelope Sec2 post-import...	0.03	OrthoFinder output from all 47 species
Azfi_s0155.g053632	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.11	OrthoFinder output from all 47 species
Azfi_s0509.g074716	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.03	OrthoFinder output from all 47 species
Cba_g17139	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Ceric.02G067600.1	SECA1, AtcpSecA,...	component *(SecA1) of thylakoid membrane Sec1...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000219.51	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic...	0.04	OrthoFinder output from all 47 species
Cre12.g517900	SECA1, AtcpSecA, AGY1	Protein translocation.chloroplast.thylakoid membrane...	0.08	OrthoFinder output from all 47 species
Dac_g06495	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Dac_g06496	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Dcu_g05773	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Dde_g09974	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Dde_g13633	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.07	OrthoFinder output from all 47 species
Ehy_g07099	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Ehy_g19288	SECA2	component *(SecA2) of inner envelope Sec2 post-import...	0.02	OrthoFinder output from all 47 species
GSVIVT01028249001	SECA1, AtcpSecA, AGY1	Protein translocation.chloroplast.thylakoid membrane...	0.12	OrthoFinder output from all 47 species
Gb_00858	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic...	0.08	OrthoFinder output from all 47 species
Gb_34931	SECA1, AtcpSecA, AGY1	component SecA1 of thylakoid membrane Sec1 translocation system	0.08	OrthoFinder output from all 47 species
LOC_Os01g21820.1	SECA1, AtcpSecA,...	component SecA2 of inner envelope Sec2 post-import...	0.12	OrthoFinder output from all 47 species
Len_g29022	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.03	OrthoFinder output from all 47 species
Len_g36322	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.1	OrthoFinder output from all 47 species
Lfl_g02357	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.09	OrthoFinder output from all 47 species
MA_304459g0010	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic...	0.03	OrthoFinder output from all 47 species
MA_414920g0010	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic OS=Pisum...	0.01	OrthoFinder output from all 47 species
MA_8762g0010	SECA1, AtcpSecA, AGY1	Protein translocase subunit SECA1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Mp5g09750.1	SECA1, AtcpSecA, AGY1	component SecA1 of thylakoid membrane Sec1 translocation system	0.08	OrthoFinder output from all 47 species
Mp5g18780.1	SECA2	component SecA2 of inner envelope Sec2 post-import...	0.02	OrthoFinder output from all 47 species
Msp_g23935	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Msp_g23936	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.07	OrthoFinder output from all 47 species
Nbi_g15165	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Nbi_g30518	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Ore_g18515	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Pir_g06026	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Pir_g57370	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.02	OrthoFinder output from all 47 species
Pnu_g06676	SECA2	component *(SecA2) of inner envelope Sec2 post-import...	0.02	OrthoFinder output from all 47 species
Pnu_g31499	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Ppi_g05317	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Ppi_g14444	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011794	SECA2	component *(SecA2) of inner envelope Sec2 post-import...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016761	SECA1, AtcpSecA, AGY1	channel-forming component *(Tim23) of inner...	0.05	OrthoFinder output from all 47 species
Sam_g15982	No alias	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Sam_g28166	No alias	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Smo156007	SECA1, AtcpSecA, AGY1	Protein translocation.chloroplast.thylakoid membrane...	0.07	OrthoFinder output from all 47 species
Solyc01g080840.3.1	SECA1, AtcpSecA,...	component SecA1 of thylakoid membrane Sec1 translocation system	0.08	OrthoFinder output from all 47 species
Spa_g10168	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.09	OrthoFinder output from all 47 species
Spa_g17299	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Zm00001e008967_P001	SECA2, Zm00001e008967	component SecA2 of inner envelope Sec2 post-import...	0.03	OrthoFinder output from all 47 species
Zm00001e017535_P001	SECA1, AtcpSecA,...	component SecA1 of thylakoid membrane Sec1 translocation system	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0017038	protein import	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008184	glycogen phosphorylase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011116	SecA_Wing/Scaffold	766	982
IPR011115	SecA_DEAD	92	459
IPR011130	SecA_preprotein_X-link_dom	307	416

External Links

No external refs found!

AMTR_s00045p00116920 (SECA1, AtcpSecA,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation