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  5. AMTR_s00045p00075400

AMTR_s00045p00075400 (EMB2750,...)


Aliases : EMB2750, evm_27.TU.AmTr_v1.0_scaffold00045.65

Description : Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00075400

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
GSVIVT01022204001 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder output from all 47 species
Lfl_g18972 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g51172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g057200.4.1 EMB2750, Solyc01g057200 Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.03 OrthoFinder output from all 47 species
Solyc12g098990.2.1 EMB2750, Solyc12g098990 Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 218
IPR002885 Pentatricopeptide_repeat 22 45
IPR002885 Pentatricopeptide_repeat 225 270
IPR002885 Pentatricopeptide_repeat 116 161
IPR002885 Pentatricopeptide_repeat 292 339
IPR002885 Pentatricopeptide_repeat 50 94
No external refs found!