AMTR_s00044p00145170 (PUB44, SAUL1,...)

Aliases : PUB44, SAUL1, ATPUB44, evm_27.TU.AmTr_v1.0_scaffold00044.147

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type

Gene families : OG0001077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001077_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00044p00145170

Target	Alias	Description	ECC score	Gene Family Method
Adi_g023614	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03391	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02433	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05710	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g10635	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11521	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0111.g045660	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=666-3779	0.05	OrthoFinder output from all 47 species
Azfi_s0373.g067169	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=299-2836	0.03	OrthoFinder output from all 47 species
Cba_g05316	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g13723	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G046500.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.03G047200.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.14G057700.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g02902	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10711	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g13175	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g07733	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02338	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06205	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01001115001	PUB8, B80	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
GSVIVT01010123001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
GSVIVT01013395001	PUB44, SAUL1, ATPUB44	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01024723001	PUB44, SAUL1, ATPUB44	Protein degradation.peptide tagging.Ubiquitin...	0.07	OrthoFinder output from all 47 species
LOC_Os03g45420.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os06g16410.1	LOC_Os06g16410	E3 ubiquitin ligase (PUB)	0.07	OrthoFinder output from all 47 species
LOC_Os12g17880.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os12g17900.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Len_g33518	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g03427	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Mp8g11800.1	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g13315	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g09793	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13486	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g16850	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004062	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=156-2609	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005849	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=1044-4076	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019783	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=770-3868	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023040	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=347-3472	0.04	OrthoFinder output from all 47 species
Sam_g16188	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19458	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g35802	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Smo80532	PUB44, SAUL1, ATPUB44	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Smo82283	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Solyc04g082570.3.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.07	OrthoFinder output from all 47 species
Spa_g05726	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55795	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g02165	No alias	E3 ubiquiTin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g03480	PUB44, SAUL1, ATPUB44	E3 ubiquiTin ligase *(SAUL) & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g30532	PUB44, SAUL1, ATPUB44	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e036817_P002	Zm00001e036817	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Zm00001e039535_P001	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003933	GTP cyclohydrolase activity	IEP	HCCA
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019238	cyclohydrolase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	31	105

External Links

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AMTR_s00044p00145170 (PUB44, SAUL1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation