Sequence Description Alias PCC hrr AMTR_s00002p00225810 RNA biosynthesis.transcriptional activation.bHLH transcription factor ATMYC2, MYC2, RD22BP1, JIN1, ZBF1, JAI1, evm_27.TU.AmTr_v1.0_scaffold00002.248 0.9190065411592226 2 AMTR_s00065p00171490 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Fip1 component FIP1[V], ATFIP1[V], FIPS5, ATFIPS5, evm_27.TU.AmTr_v1.0_scaffold00065.140 0.9178138106172147 2 AMTR_s00071p00180880 MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.184 0.9090184246536814 3 AMTR_s00010p00175790 evm_27.TU.AmTr_v1.0_scaffold00010.142 0.8993071040941473 4 AMTR_s00103p00067500 Multi-process regulation.circadian clock.TIC circadian clock regulator TIC, evm_27.TU.AmTr_v1.0_scaffold00103.34 0.8902687618953412 5 AMTR_s00041p00189930 Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00041.162 0.8850871516348089 6 AMTR_s00046p00170580 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).SMG7 protein SMG7, evm_27.TU.AmTr_v1.0_scaffold00046.93 0.8761155389505368 7 AMTR_s00009p00164690 Protein biosynthesis.translation initiation.mRNA loading.eIF-iso4F unwinding complex.eIF-iso4G component eIFiso4G1, evm_27.TU.AmTr_v1.0_scaffold00009.93 0.8557066172540737 8 AMTR_s00009p00164260 Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana eIFiso4G1, evm_27.TU.AmTr_v1.0_scaffold00009.92 0.854349784519211 9 AMTR_s00119p00117410 RNA biosynthesis.transcriptional activation.EIL (EIN3-like) transcription factor EIL1, AtEIL1, evm_27.TU.AmTr_v1.0_scaffold00119.91 0.8498624374711491 19 AMTR_s00142p00054380 RNA processing.RNA quality control Exon Junction complex (EJC).core components.CASC3 component evm_27.TU.AmTr_v1.0_scaffold00142.31 0.848805198162792 11 AMTR_s00010p00261170 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-v-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00010.450 0.8481265381956453 12 AMTR_s00145p00075460 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter PGP20, evm_27.TU.AmTr_v1.0_scaffold00145.27 0.847533611042689 25 AMTR_s00072p00045010 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase evm_27.TU.AmTr_v1.0_scaffold00072.15 0.8417736211945097 17 AMTR_s00078p00155240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor evm_27.TU.AmTr_v1.0_scaffold00078.136 0.839337863279868 54 AMTR_s00147p00043750 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins IMPA-1, IMPA1, AT-IMP, ATKAP ALPHA, AIMP ALPHA, evm_27.TU.AmTr_v1.0_scaffold00147.17 0.838895786014766 51 AMTR_s00056p00117010 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter PEN3, ABCG36, ATPDR8, ATABCG36, PDR8, evm_27.TU.AmTr_v1.0_scaffold00056.84 0.8379795025446751 17 AMTR_s00138p00043730 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00138.18 0.8346081956022716 18 AMTR_s00066p00134410 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.129 0.8341400512604861 81 AMTR_s00004p00045050 FRIGIDA-like protein 4a OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.28 0.8336566663601495 25 AMTR_s00155p00028780 Protein PAT1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00155.12 0.8335618573424023 38 AMTR_s00174p00040410 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.MAP-kinase phosphatase ATMKP1, MKP1, evm_27.TU.AmTr_v1.0_scaffold00174.16 0.8315103497836495 26 AMTR_s00058p00125550 evm_27.TU.AmTr_v1.0_scaffold00058.89 0.8254497732073173 26 AMTR_s00004p00270220 evm_27.TU.AmTr_v1.0_scaffold00004.293 0.8243242821537797 88 AMTR_s00079p00195720 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group PR5K, evm_27.TU.AmTr_v1.0_scaffold00079.129 0.822724393463346 25 AMTR_s00008p00210700 Coenzyme metabolism.FMN/FAD biosynthesis.bifunctional GTP cyclohydrolase II (RibA) and DHBP synthase (RibB) GCH, ATGCH, RFD1, ATRIBA1, evm_27.TU.AmTr_v1.0_scaffold00008.133 0.8222820295260891 26 AMTR_s00003p00267060 0.8212945162118573 27 AMTR_s00045p00124580 RNA biosynthesis.transcriptional activation.GeBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00045.122 0.8211342548090981 28 AMTR_s00016p00153170 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.subcluster H/CPL phosphatase ATCPL3, CPL3, evm_27.TU.AmTr_v1.0_scaffold00016.110 0.8211294114822134 29 AMTR_s00061p00071760 evm_27.TU.AmTr_v1.0_scaffold00061.47 0.8202060217827347 30 AMTR_s00025p00232020 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade F phosphatase evm_27.TU.AmTr_v1.0_scaffold00025.340 0.8184657480591117 31 AMTR_s00056p00036030 RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor NINJA, evm_27.TU.AmTr_v1.0_scaffold00056.20 0.8181887122953874 68 AMTR_s00120p00076230 Protein modification.phosphorylation.TKL kinase superfamily.LRR-III kinase TMKL1, evm_27.TU.AmTr_v1.0_scaffold00120.33 0.8180322500284476 33 AMTR_s00048p00218130 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase UGT73B1, evm_27.TU.AmTr_v1.0_scaffold00048.199 0.8172138706254943 34 AMTR_s00025p00215680 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00025.292 0.8158087875538677 78 AMTR_s00058p00090300 RNA biosynthesis.transcriptional activation.WRKY transcription factor WRKY4, evm_27.TU.AmTr_v1.0_scaffold00058.48 0.8151720514692744 36 AMTR_s00058p00188470 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB1 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00058.186 0.8149028198941989 62 AMTR_s00079p00188790 Protein modification.phosphorylation.TKL kinase superfamily.LRK10-1-like kinase evm_27.TU.AmTr_v1.0_scaffold00079.112 0.8139957775351366 47 AMTR_s00057p00208300 evm_27.TU.AmTr_v1.0_scaffold00057.251 0.8139148524464243 39 AMTR_s00019p00169230 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).PRPF3 snRNP-associated protein evm_27.TU.AmTr_v1.0_scaffold00019.168 0.8133384023278442 42 AMTR_s00140p00108000 evm_27.TU.AmTr_v1.0_scaffold00140.53 0.8127815271735804 41 AMTR_s00727p00010990 Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum HCT, evm_27.TU.AmTr_v1.0_scaffold00727.2 0.811496528371558 42 AMTR_s00083p00014540 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component ALA1, evm_27.TU.AmTr_v1.0_scaffold00083.2 0.8079987750797806 43 AMTR_s00034p00071480 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis thaliana ITN1, evm_27.TU.AmTr_v1.0_scaffold00034.17 0.8077406795152475 44 AMTR_s00006p00266790 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.UAfT nucleotide sugar transporter evm_27.TU.AmTr_v1.0_scaffold00006.292 0.8077070419530499 45 AMTR_s00041p00174550 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132, evm_27.TU.AmTr_v1.0_scaffold00041.131 0.8074634385245153 47 AMTR_s00137p00027820 Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum HCT, evm_27.TU.AmTr_v1.0_scaffold00137.5 0.8069126380247074 47 AMTR_s00135p00069650 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ligase complexes.BTB/POZ substrate adaptor components.NPH3 component RPT3, NPH3, JK218, evm_27.TU.AmTr_v1.0_scaffold00135.33 0.8057517484538178 48 AMTR_s00029p00040760 Multi-process regulation.circadian clock.morning element regulation.CHE repression factor evm_27.TU.AmTr_v1.0_scaffold00029.28 0.8056519022161708 49 AMTR_s00186p00018500 RNA biosynthesis.transcriptional activation.GRAS transcription factor SCL1, evm_27.TU.AmTr_v1.0_scaffold00186.3 0.8016508144162984 64 AMTR_s00142p00049490 Nutrient uptake.phosphorus assimilation.phosphate signalling.PHR1 transcription factor evm_27.TU.AmTr_v1.0_scaffold00142.28 0.8011664899992779 54 AMTR_s00002p00271250 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase SD2-5, evm_27.TU.AmTr_v1.0_scaffold00002.617 0.801015004567934 54 AMTR_s00001p00263690 evm_27.TU.AmTr_v1.0_scaffold00001.395 0.7987530992056016 55 AMTR_s00044p00063370 evm_27.TU.AmTr_v1.0_scaffold00044.34 0.7986692554537013 61 AMTR_s00072p00171260 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type PUB14, ATPUB14, evm_27.TU.AmTr_v1.0_scaffold00072.119 0.7982867072477002 57 AMTR_s00041p00118190 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type evm_27.TU.AmTr_v1.0_scaffold00041.82 0.7976032315005732 58 AMTR_s00007p00243380 evm_27.TU.AmTr_v1.0_scaffold00007.258 0.7958451601518768 59 AMTR_s00032p00174300 evm_27.TU.AmTr_v1.0_scaffold00032.148 0.7956139932666328 89 AMTR_s00058p00197270 Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase HCT, evm_27.TU.AmTr_v1.0_scaffold00058.199 0.7934049211314624 61 AMTR_s00095p00122180 Protein modification.protein folding and quality control.RAC ribosome-associated chaperone complex.ZRF Hsp40-chaperone component evm_27.TU.AmTr_v1.0_scaffold00095.75 0.792510174351205 97 AMTR_s00175p00042660 F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00175.17 0.7921628468303255 63 AMTR_s00004p00270260 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00004.294 0.7913553671362787 64 AMTR_s00078p00191480 Multiprotein-bridging factor 1c OS=Arabidopsis thaliana MBF1C, ATMBF1C, evm_27.TU.AmTr_v1.0_scaffold00078.199 0.7911330334257676 65 AMTR_s00033p00242990 Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana ADR1 0.7907070751378145 66 AMTR_s00069p00055450 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.33 0.7899750240164166 67 AMTR_s00025p00107390 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED5/MED24/MED33 component MED33A, RFR1, evm_27.TU.AmTr_v1.0_scaffold00025.92 0.7897904289235342 68 AMTR_s00068p00075130 5-adenylylsulfate reductase-like 7 OS=Arabidopsis thaliana ATAPRL7, APRL7, evm_27.TU.AmTr_v1.0_scaffold00068.32 0.7885449776882838 71 AMTR_s00154p00048010 Protein modification.phosphorylation.TKL kinase superfamily.LRR-XV kinase CLI1, RPK2, TOAD2, evm_27.TU.AmTr_v1.0_scaffold00154.29 0.7880724615665877 70 AMTR_s00111p00140620 RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00111.120 0.7863616919270593 97 AMTR_s00012p00221000 External stimuli response.biotic stress.pathogen-associated molecular pattern (PAMP).PTI (pattern-triggered immunity) network.bacterial elicitor response.BIK1 kinase APK1B, PK1B, evm_27.TU.AmTr_v1.0_scaffold00012.165 0.786347032699586 73 AMTR_s00002p00167510 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase evm_27.TU.AmTr_v1.0_scaffold00002.141 0.7856729713730081 74 AMTR_s00099p00115860 Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.99 0.7853485380088427 76 AMTR_s00065p00116550 Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.68 0.7849796228349667 77 AMTR_s00165p00025190 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00165.9 0.7845333391082591 78 AMTR_s00048p00164020 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00048.117 0.7837646778621592 79 AMTR_s00025p00063780 evm_27.TU.AmTr_v1.0_scaffold00025.42 0.782567353730614 80 AMTR_s00019p00227240 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REIL maturation factor FZF, evm_27.TU.AmTr_v1.0_scaffold00019.294 0.7822516206638128 97 AMTR_s00095p00177830 evm_27.TU.AmTr_v1.0_scaffold00095.156 0.7810808621591621 82 AMTR_s00103p00147670 evm_27.TU.AmTr_v1.0_scaffold00103.105 0.7800933987161826 84 AMTR_s00002p00269600 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.GBF-type ARF-GEF factor GN, EMB30, VAN7, evm_27.TU.AmTr_v1.0_scaffold00002.551 0.7800368763814295 85 AMTR_s00002p00269930 Nutrient uptake.sulfur assimilation.sulfate assimilation.ATP sulfurylase APS1, evm_27.TU.AmTr_v1.0_scaffold00002.565 0.7793789979766641 86 AMTR_s00036p00147120 Protein modification.phosphorylation.CK kinase superfamily.CKL protein kinase CKL2, evm_27.TU.AmTr_v1.0_scaffold00036.71 0.7793251298564356 87 AMTR_s00071p00019220 Protein modification.phosphorylation.STE kinase superfamily.MAP3K-MEKK kinase MAP3KA, MAPKKK3, evm_27.TU.AmTr_v1.0_scaffold00071.8 0.778791886110175 88 AMTR_s00009p00235710 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IX kinase families.RLCK-IXb kinase evm_27.TU.AmTr_v1.0_scaffold00009.195 0.7780457437251038 94 AMTR_s00053p00044540 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type evm_27.TU.AmTr_v1.0_scaffold00053.22 0.7773243337597522 90 AMTR_s00015p00251000 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase GT72B1, UGT72B1, evm_27.TU.AmTr_v1.0_scaffold00015.101 0.7770257152333322 91 AMTR_s00088p00111920 evm_27.TU.AmTr_v1.0_scaffold00088.75 0.7767746786487563 92 AMTR_s00057p00103590 evm_27.TU.AmTr_v1.0_scaffold00057.79 0.7753796429821094 93 AMTR_s00036p00168840 Multi-process regulation.circadian clock.evening element regulation.Evening complex (EC).ELF3 component ELF3, PYK20, evm_27.TU.AmTr_v1.0_scaffold00036.83 0.774705243922219 94 AMTR_s00059p00094000 DNA damage response.DNA repair mechanisms.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.ARP AP-endonuclease ARP, evm_27.TU.AmTr_v1.0_scaffold00059.68 0.7744960257561385 96 AMTR_s00019p00244830 AAA-ATPase At3g50940 OS=Arabidopsis thaliana AATP1, evm_27.TU.AmTr_v1.0_scaffold00019.374 0.7738170525112195 97 AMTR_s00077p00184480 Protein LURP-one-related 8 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.212 0.7734302441400076 98 AMTR_s00058p00125260 evm_27.TU.AmTr_v1.0_scaffold00058.88 0.7731176803118497 99 AMTR_s00264p00014380 evm_27.TU.AmTr_v1.0_scaffold00264.3 0.7727753940144216 100