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  5. AMTR_s00041p00085460

AMTR_s00041p00085460 (UVR2, PHR1,...)


Aliases : UVR2, PHR1, evm_27.TU.AmTr_v1.0_scaffold00041.52

Description : DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1)


Gene families : OG0004458 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004458_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00085460

Target Alias Description ECC score Gene Family Method Actions
Aob_g39847 UVR2, PHR1 EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020952.44 UVR2, PHR1 DNA damage response.DNA repair... 0.01 OrthoFinder output from all 47 species
Nbi_g10272 UVR2, PHR1 EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003913 DNA photolyase activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR005101 Cryptochr/Photolyase_FAD-bd 234 460
IPR006050 DNA_photolyase_N 33 193
No external refs found!