AMTR_s00040p00189460 (GRF4, AtGRF4,...)

Aliases : GRF4, AtGRF4, evm_27.TU.AmTr_v1.0_scaffold00040.185

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00189460
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.03	OrthoFinder output from all 47 species
AT2G22840	GRF1, AtGRF1	growth-regulating factor 1	0.04	OrthoFinder output from all 47 species
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.04	OrthoFinder output from all 47 species
AT2G45480	GRF9, AtGRF9	growth-regulating factor 9	0.04	OrthoFinder output from all 47 species
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.06	OrthoFinder output from all 47 species
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.06	OrthoFinder output from all 47 species
Adi_g014148	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g021141	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Aev_g38831	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ala_g26167	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Als_g10136	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Als_g13520	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Als_g16124	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Als_g51482	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aob_g27286	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene35340.t1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Aspi01Gene37446.t1	GRF5, AtGRF5,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene38017.t1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene68335.t1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Aspi01Gene72796.t2	GRF2, AtGRF2,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000094	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0032.g024577	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0097.g043820	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0256.g060519	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Cba_g05462	GRF2, AtGRF2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g09120	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Cba_g11628	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Cba_g12857	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ceric.15G044200.1	GRF3, AtGRF3,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Ceric.15G046200.1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.08	OrthoFinder output from all 47 species
Ceric.36G051200.1	GRF5, AtGRF5,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Dac_g14130	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dac_g23460	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g14903	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g16923	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.07	OrthoFinder output from all 47 species
Dde_g38973	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dde_g47336	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g12992	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Ehy_g26378	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01007165001	GRF2, AtGRF2	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.01	OrthoFinder output from all 47 species
GSVIVT01009299001	GRF1, AtGRF1	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
GSVIVT01015095001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	OrthoFinder output from all 47 species
GSVIVT01016762001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	OrthoFinder output from all 47 species
GSVIVT01019667001	AtGRF8, GRF8	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
GSVIVT01019913001	GRF3, AtGRF3	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
GSVIVT01024326001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	OrthoFinder output from all 47 species
GSVIVT01027535001	GRF9, AtGRF9	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.01	OrthoFinder output from all 47 species
GSVIVT01033800001	GRF3, AtGRF3	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.07	OrthoFinder output from all 47 species
GSVIVT01038629001	AtGRF7, GRF7	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
Gb_05477	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Gb_19288	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Gb_20400	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Gb_20443	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.06	OrthoFinder output from all 47 species
Gb_26136	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
LOC_Os02g45570.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.06	OrthoFinder output from all 47 species
LOC_Os02g47280.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
LOC_Os02g53690.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
LOC_Os03g47140.1	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
LOC_Os03g51970.1	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
LOC_Os04g48510.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.09	OrthoFinder output from all 47 species
LOC_Os04g51190.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
LOC_Os06g02560.1	GRF2, AtGRF2,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
LOC_Os11g35030.1	GRF2, AtGRF2,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
LOC_Os12g29980.1	GRF2, AtGRF2,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Len_g10947	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Len_g15450	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Len_g36054	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Len_g36239	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
MA_111469g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.1	OrthoFinder output from all 47 species
MA_137877g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.08	OrthoFinder output from all 47 species
MA_18836g0010	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.1	OrthoFinder output from all 47 species
MA_88101g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Msp_g37728	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Msp_g44210	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Nbi_g07300	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ore_g20696	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g05270	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g06956	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g30072	GRF3, AtGRF3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g63627	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011382	No alias	not classified & original description: CDS=103-1059	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225	No alias	not classified & original description: CDS=695-3535	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021398	GRF4, AtGRF4	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023900	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Sam_g37566	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g52037	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo412762	GRF2, AtGRF2	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
Smo420739	GRF2, AtGRF2	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
Smo442384	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
Solyc01g091540.3.1	GRF9, AtGRF9,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Solyc03g082430.1.1	AtGRF7, GRF7,...	component GRF of GRF-GIF transcriptional complex	0.12	OrthoFinder output from all 47 species
Solyc07g041640.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.1	OrthoFinder output from all 47 species
Solyc08g005430.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc09g009200.3.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.06	OrthoFinder output from all 47 species
Solyc10g083510.2.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.06	OrthoFinder output from all 47 species
Spa_g06684	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Spa_g48274	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Tin_g11764	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Tin_g32090	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g45753	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e011207_P003	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e012104_P002	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Zm00001e015436_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
Zm00001e015561_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Zm00001e016029_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Zm00001e023229_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e029851_P005	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e030774_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Zm00001e036224_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e036657_P001	GRF6, AtGRF6,...	component GRF of GRF-GIF transcriptional complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016597	amino acid binding	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	70	105
IPR014977	WRC_dom	133	177

External Links

No external refs found!

AMTR_s00040p00189460 (GRF4, AtGRF4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation