AMTR_s00039p00236750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.227

No description available


Gene families : OG0001446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001446_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00236750
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT5G59990 No alias CCT motif family protein 0.04 OrthoFinder output from all 47 species
Azfi_s0052.g031598 No alias not classified & original description: CDS=1-1092 0.03 OrthoFinder output from all 47 species
Ceric.27G059800.1 Ceric.27G059800 CMF transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
LOC_Os01g61900.1 LOC_Os01g61900 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os10g32900.1 LOC_Os10g32900 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pnu_g18525 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25892 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g066510.4.1 ASML2, Solyc07g066510 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e004626_P002 Zm00001e004626 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e012722_P001 Zm00001e012722 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e020093_P001 Zm00001e020093 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 320 364
No external refs found!