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  5. AMTR_s00039p00229380

AMTR_s00039p00229380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.212

No description available


Gene families : OG0000527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00229380
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AT4G05490 No alias RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g03067 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aev_g04631 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aev_g18160 FBW2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01223.t1 SKIP1, Aspi01Gene01223 substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Ceric.06G086600.1 FBW2, Ceric.06G086600 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.09G079900.1 SKIP1, Ceric.09G079900 substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g03280 No alias substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01022415001 FBW2 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
LOC_Os08g09670.1 LOC_Os08g09670 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g41860.1 LOC_Os11g41860 Putative F-box/LRR-repeat protein 23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g15859 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Len_g18138 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g10300.1 No alias F-box protein SKIP1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g07000.1 No alias component F-box of SCF E3 ubiquitin ligase complex 0.05 OrthoFinder output from all 47 species
Mp5g21020.1 No alias F-box protein SKIP1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp5g21380.1 No alias component FBX of SCF E3 ubiquitin ligase complex 0.01 OrthoFinder output from all 47 species
Mp5g21960.1 No alias F-box protein FBW2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g21970.1 No alias F-box protein SKIP1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp7g10170.1 No alias component F-box of SCF E3 ubiquitin ligase complex 0.04 OrthoFinder output from all 47 species
Nbi_g14864 SKIP1 substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Pir_g42837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16820 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0193.g025375 FBW2 substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Smo410064 SKIP1 F-box protein SKIP1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g52157 SKIP1 substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e039983_P001 Zm00001e039983 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!