AMTR_s00038p00238890 (RPS6A, RPS6,...)

Aliases : RPS6A, RPS6, evm_27.TU.AmTr_v1.0_scaffold00038.246

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS6 component

Gene families : OG0001926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00038p00238890

Target	Alias	Description	ECC score	Gene Family Method
AT4G31700	RPS6A, RPS6	ribosomal protein S6	0.05	OrthoFinder output from all 47 species
AT5G10360	EMB3010, RPS6B	Ribosomal protein S6e	0.06	OrthoFinder output from all 47 species
Adi_g043403	RPS6A, RPS6	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g27846	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g11616	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g30555	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g06817	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0114.g046096	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.16G007200.1	EMB3010, RPS6B,...	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.32G000200.1	EMB3010, RPS6B,...	component *(eS6) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000704.73	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Cre09.g400650	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Dac_g32094	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g12801	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g34811	RPS6A, RPS6	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g09718	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Gb_13281	EMB3010, RPS6B	component RPS6 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os03g27260.1	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os07g42950.1	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.04	OrthoFinder output from all 47 species
Lfl_g25069	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_10426804g0010	RPS6A, RPS6	component RPS6 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_72828g0010	EMB3010, RPS6B	component RPS6 of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp4g01750.1	EMB3010, RPS6B	component RPS6 of SSU proteome	0.04	OrthoFinder output from all 47 species
Ore_g05921	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ore_g26609	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c15_25430V3.1	EMB3010, RPS6B,...	Ribosomal protein S6e	0.01	OrthoFinder output from all 47 species
Pp3c15_25780V3.1	EMB3010, RPS6B,...	Ribosomal protein S6e	0.03	OrthoFinder output from all 47 species
Sam_g19005	No alias	component *(eS6) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo172795	EMB3010, RPS6B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc08g074240.3.1	RPS6A, RPS6,...	component RPS6 of SSU proteome	0.06	OrthoFinder output from all 47 species
Solyc12g096300.2.1	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g10201	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g12883	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g17271	EMB3010, RPS6B	component *(eS6) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e010802_P001	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.07	OrthoFinder output from all 47 species
Zm00001e035580_P002	EMB3010, RPS6B,...	component RPS6 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001377	Ribosomal_S6e	1	129

External Links

No external refs found!

AMTR_s00038p00238890 (RPS6A, RPS6,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation