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  5. AMTR_s00037p00169980

AMTR_s00037p00169980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00037.81

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00037p00169980
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene63285.t2 Aspi01Gene63285 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g58210.1 LOC_Os02g58210 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Lfl_g35782 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
MA_491986g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Solyc04g049140.4.1 IBM1, Solyc04g049140 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 1075 1173
No external refs found!