AMTR_s00036p00206680 (CHMP1A, VPS46.2,...)

Aliases : CHMP1A, VPS46.2, evm_27.TU.AmTr_v1.0_scaffold00036.124

Description : Vesicle trafficking.endomembrane trafficking.ESCRT (Endosomal Sorting Complex Required for Transport) complexes.ESCRT-III complex.VPS46/CHMP1 associated protein

Gene families : OG0001221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00036p00206680

Target	Alias	Description	ECC score	Gene Family Method
AT1G73030	CHMP1A, VPS46.2	SNF7 family protein	0.03	OrthoFinder output from all 47 species
Adi_g015565	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Adi_g110995	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
Als_g37412	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.04	OrthoFinder output from all 47 species
Dcu_g45737	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
Dde_g04202	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01016898001	CHMP1A, VPS46.2	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.03	OrthoFinder output from all 47 species
LOC_Os06g43590.2	CHMP1A, VPS46.2,...	VPS46/CHMP1 associated protein of ESCRT-III complex	0.04	OrthoFinder output from all 47 species
Msp_g15713	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Nbi_g29887	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001940	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Sam_g20146	No alias	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Solyc03g121360.1.1	CHMP1B, VPS46.1,...	VPS46/CHMP1 associated protein of ESCRT-III complex	0.04	OrthoFinder output from all 47 species
Spa_g08077	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Spa_g08488	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
Spa_g08489	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
Tin_g03806	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
Tin_g04421	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0006452	translational frameshifting	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005024	Snf7_fam	10	173

External Links

No external refs found!

AMTR_s00036p00206680 (CHMP1A, VPS46.2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation