Aliases : ARF4
Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor
Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G19220 | ARF19, IAA22, ARF11 | auxin response factor 19 | 0.07 | OrthoFinder output from all 47 species | |
Adi_g024483 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g054964 | ARF16 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g098002 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g107312 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g06926 | ARF1 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g11834 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g34662 | ARF1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g49574 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g07961 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g70630 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene05878.t1 | ARF8, ATARF8,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene05880.t1 | ARF19, IAA22,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene11714.t1 | ARF6, Aspi01Gene11714 | ARF-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene29721.t2 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene33428.t2 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene46203.t1 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene46204.t2 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0065.g035933 | ARF6 | not classified & original description: CDS=1-678 | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0271.g061201 | ARF1 | not classified & original description: CDS=77-1246 | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0433.g069577 | ARF6 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g07702 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g37448 | ARF6 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01015035001 | ARF19, IAA22, ARF11 | RNA biosynthesis.transcriptional activation.B3... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01021128001 | ARF3, ETT | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
Gb_02925 | ARF19, IAA22, ARF11 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Gb_39685 | ARF6 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g36054.1 | ARF1, LOC_Os04g36054 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g18657 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g29546 | ARF11 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g10591 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g06806 | ARF1 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g04470 | ARF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g15165 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g19283 | ARF4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g29226 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g04439 | ARF10 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g11690 | ARF6 | transcriptional repressor *(IAA/AUX) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0047.g013444 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g04406 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g103050.3.1 | ARF1, Solyc01g103050 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g047460.3.1 | ARF19, IAA22,... | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
Solyc07g016180.3.1 | ARF19, IAA22,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g007810.4.1 | ARF16, Solyc09g007810 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
Solyc11g069190.2.1 | ARF4, Solyc11g069190 | transcription factor (ARF) | 0.05 | OrthoFinder output from all 47 species | |
Spa_g12615 | ARF16 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g51847 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
CC | GO:0005634 | nucleus | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
BP | GO:0009725 | response to hormone | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | HCCA |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | HCCA |
MF | GO:0005509 | calcium ion binding | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | HCCA |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | HCCA |
MF | GO:0019238 | cyclohydrolase activity | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
No external refs found! |